Click here to switch to the map view.

The map label for this gene is rnaSA [H]

Identifier: 115350587

GI number: 115350587

Start: 599614

End: 600045

Strand: Direct

Name: rnaSA [H]

Synonym: Bamb_0533

Alternate gene names: 115350587

Gene position: 599614-600045 (Clockwise)

Preceding gene: 115350586

Following gene: 115350588

Centisome position: 16.86

GC content: 65.28

Gene sequence:

>432_bases
ATGGCACGCAAGTGGCTCCGCAACGGCGCGCTGGCGTCCGTCTTCGCGATGTTCGCGATGGGTATCGTCGGTACACCGAC
GGGCAGTCTGGTTTCCGCCGCTTACGCACGGCAGGCCGTTTCGGCCGACCTGGCCGTCGGCGGGGTCGATACGATCCCGA
CCGCCCGTCTGCCGCGCGAGGCCGTGACCACGCTTGGCCTGATCGGCACCGGTGGCCCCTATCCGTACGAGAAAGACGGC
GTCGTCTTCGGCAACCGCGAGCGGATCCTGCCTAAGGCGAAGCGCGGCTACTACCACGAGTACACGGTGCCGACGCCGCG
CGCACGCAATCGCGGCGCGCGCCGCATCGTCTGTGGCGGGCCGTTGCGCCGGATCGACAACTGTTATTACACGGACGACC
ACTACAACAGTTTTAAACGTATTGTTGAATGA

Upstream 100 bases:

>100_bases
TCGATTCCCAAACGAACATTGATTCGCAAGGACAATAGCGCTACGCTAACGCCTTTGGTTGGTCGTCAACTACTTGATTT
AACAGCGGGAACCCTGGTTC

Downstream 100 bases:

>100_bases
CTTCGGGATGAATGGCATGAGCGACTCCATCTACGCGCACGACACGGCGGGGGCGGAACTGTTCGCGGCCGGCGACGGCA
ATCTGTTCCAGCGCGTGATG

Product: guanine-specific ribonuclease N1 and T1

Products: NA

Alternate protein names: RNase Sa [H]

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MARKWLRNGALASVFAMFAMGIVGTPTGSLVSAAYARQAVSADLAVGGVDTIPTARLPREAVTTLGLIGTGGPYPYEKDG
VVFGNRERILPKAKRGYYHEYTVPTPRARNRGARRIVCGGPLRRIDNCYYTDDHYNSFKRIVE

Sequences:

>Translated_143_residues
MARKWLRNGALASVFAMFAMGIVGTPTGSLVSAAYARQAVSADLAVGGVDTIPTARLPREAVTTLGLIGTGGPYPYEKDG
VVFGNRERILPKAKRGYYHEYTVPTPRARNRGARRIVCGGPLRRIDNCYYTDDHYNSFKRIVE
>Mature_142_residues
ARKWLRNGALASVFAMFAMGIVGTPTGSLVSAAYARQAVSADLAVGGVDTIPTARLPREAVTTLGLIGTGGPYPYEKDGV
VFGNRERILPKAKRGYYHEYTVPTPRARNRGARRIVCGGPLRRIDNCYYTDDHYNSFKRIVE

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 15681; Mature: 15550

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKWLRNGALASVFAMFAMGIVGTPTGSLVSAAYARQAVSADLAVGGVDTIPTARLPRE
CCCHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHH
AVTTLGLIGTGGPYPYEKDGVVFGNRERILPKAKRGYYHEYTVPTPRARNRGARRIVCGG
HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCEEECCCCCCCCCCCCCCEEEECC
PLRRIDNCYYTDDHYNSFKRIVE
CHHHHCCCEECCHHHHHHHHHCC
>Mature Secondary Structure 
ARKWLRNGALASVFAMFAMGIVGTPTGSLVSAAYARQAVSADLAVGGVDTIPTARLPRE
CCHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHH
AVTTLGLIGTGGPYPYEKDGVVFGNRERILPKAKRGYYHEYTVPTPRARNRGARRIVCGG
HHHHHHCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCEEECCCCCCCCCCCCCCEEEECC
PLRRIDNCYYTDDHYNSFKRIVE
CHHHHCCCEECCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3098582; 3118883; 1654932; 8396032; 9757110; 9819211; 11455593 [H]