Click here to switch to the map view.

The map label for this gene is araH

Identifier: 115350578

GI number: 115350578

Start: 589493

End: 590509

Strand: Direct

Name: araH

Synonym: Bamb_0524

Alternate gene names: 115350578

Gene position: 589493-590509 (Clockwise)

Preceding gene: 115350577

Following gene: 115350579

Centisome position: 16.57

GC content: 65.39

Gene sequence:

>1017_bases
ATGCAAGTCCGGGAAAACCTCGCCAGCGCAGCCGTGAAGCCGTCGGCCGACGCGCTGGTTCCACAGCAGAGCGACCGCCA
GAAGTGGTGGCAGCACCTCACCGAATACAGCCTGATCGCGATCTTCGCGGTGATGTTCGTCACGATGTCGCTGACGGTCG
ATCACTTCTTTTCGATCGACAACATGCTCGGCCTCGCGCTGTCGATCTCGCAGATCGGGATGGTCGCGTGCACGATGATG
TTCTGTCTGGCCTCGCGCGACTTCGACCTGTCGATCGGCTCGACCGTCGCGTTCTCCGGCGTGCTGTGCGCGATGGTGCT
GAACGCGACCGACAACACGTTCGTCGCGATCATCGCGGCGGTCGCGGCCGGTGCGGCGATCGGGTTCGTGAACGGCGCGG
TGATCGCATACCTGCGCATCAACGCGCTGATCACGACGCTCGCGACGATGGAAATCGTGCGCGGGCTCGGCTTCATCGTG
TCGAAGGGGCAGGCGGTCGGCGTGTCGTCGGACACGTTCATCGCGCTCGGCGGGCTGTCGCTGTTCGGTGTATCGCTGCC
GATCTGGGTCACGCTCCTGTGCTTCATCGTGTTCGGCGTGCTGCTGAACCAGACCGTGTACGGCCGCAATACGCTCGCGA
TCGGCGGCAACCCGGAGGCGTCGCGCCTGGCGGGGATCAACGTCGAACGCACGCGCGTCTATATCTTCCTGATCCAGGGC
GCGGTGACGGCGCTCGCCGGGGTTATCCTCGCGTCGCGCATCACGTCGGGCCAGCCGAACGCCGCGCAGGGCTTCGAGCT
GAACGTGATCTCCGCCTGCGTGCTCGGCGGCGTGTCGCTGATGGGCGGCCGCGCGACGATCTCGGGCGTCGTGATCGGCG
TGCTGATCATGGGCACCGTCGAGAACGTGATGAACCTGATGAACATCGACGCGTTCTACCAGTACCTGGTGCGCGGCGCG
ATCCTGCTCGCGGCCGTGCTGCTCGACCAGCTGAAGAACCGCGGCGTACGCGACTGA

Upstream 100 bases:

>100_bases
GGCGGCCTGACGCGGTGTCAGGTCGCCGCGGGCGATGCAGGATATTCGAATCGATCACGCGCGGCGCGGGCCGCGCGATG
CAGGAGCAGGAGACACAACC

Downstream 100 bases:

>100_bases
CCGATTCCACGGAGACGATTCGCATGACCATCGAAACTTCCGCGCAGGATCCGCGCGCCGCGAGCGACGCGCGCTATGCG
CGCTACCCGAGCCTCGCGGA

Product: L-arabinose transporter permease

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MQVRENLASAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFVTMSLTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SKGQAVGVSSDTFIALGGLSLFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTVENVMNLMNIDAFYQYLVRGA
ILLAAVLLDQLKNRGVRD

Sequences:

>Translated_338_residues
MQVRENLASAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFVTMSLTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SKGQAVGVSSDTFIALGGLSLFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTVENVMNLMNIDAFYQYLVRGA
ILLAAVLLDQLKNRGVRD
>Mature_338_residues
MQVRENLASAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFVTMSLTVDHFFSIDNMLGLALSISQIGMVACTMM
FCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAAVAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIV
SKGQAVGVSSDTFIALGGLSLFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTVENVMNLMNIDAFYQYLVRGA
ILLAAVLLDQLKNRGVRD

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=303, Percent_Identity=57.0957095709571, Blast_Score=335, Evalue=3e-93,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=35.8064516129032, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1788896, Length=331, Percent_Identity=31.7220543806647, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=29.8136645962733, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=49.2424242424242, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787793, Length=245, Percent_Identity=33.8775510204082, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788471, Length=266, Percent_Identity=36.4661654135338, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI87082395, Length=244, Percent_Identity=30.7377049180328, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787794, Length=265, Percent_Identity=28.3018867924528, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI145693214, Length=236, Percent_Identity=29.6610169491525, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35639; Mature: 35639

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVRENLASAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFVTMSLTVDHFFSID
CCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
VAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQAVGVSSDTFIALGGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECCHH
LFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCEEHEEEEEEEHHH
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ENVMNLMNIDAFYQYLVRGAILLAAVLLDQLKNRGVRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQVRENLASAAVKPSADALVPQQSDRQKWWQHLTEYSLIAIFAVMFVTMSLTVDHFFSID
CCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NMLGLALSISQIGMVACTMMFCLASRDFDLSIGSTVAFSGVLCAMVLNATDNTFVAIIAA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
VAAGAAIGFVNGAVIAYLRINALITTLATMEIVRGLGFIVSKGQAVGVSSDTFIALGGLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEECCHH
LFGVSLPIWVTLLCFIVFGVLLNQTVYGRNTLAIGGNPEASRLAGINVERTRVYIFLIQG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCEEHEEEEEEEHHH
AVTALAGVILASRITSGQPNAAQGFELNVISACVLGGVSLMGGRATISGVVIGVLIMGTV
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ENVMNLMNIDAFYQYLVRGAILLAAVLLDQLKNRGVRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]