| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is rnb [H]
Identifier: 115350567
GI number: 115350567
Start: 576754
End: 578844
Strand: Direct
Name: rnb [H]
Synonym: Bamb_0513
Alternate gene names: 115350567
Gene position: 576754-578844 (Clockwise)
Preceding gene: 115350566
Following gene: 115350568
Centisome position: 16.22
GC content: 69.11
Gene sequence:
>2091_bases GTGAACGTTTTCTTCGAGGAATCGGGCAGTTTCAAGGCGGGCAGCGTGCTGTCGCGCCAGGGCGACGCGTTTCAGGTCGA GTTGCCCGGCGGGCGGCGGGCGAAGGTGCGCGCAAAAGACGTGCTGATCGAATTCGAGAAGCCGGCCGCGAGCGAACTGA TGCAGGAAGCCGACACGGCCGCGCAGCAGATCGACCTGGATTTCCTGTGGGAATGCGCGCCGGCGGAAGAATTCACCTAC ACGGCGCTGGCCGCGGAATACTTCGGCGCGACCTACGGGGCGGTCGAGCGCGCGGCGCTGGTGCTGCGGCTGCACGGCTC GCCCGTCTACTTCCGCCGCAAGGGGCGCGGCCAGTACCAGCGCGCGCCGGAAGATCAGCTCAAGATGGCGCTCGCGTCGC TCGAGCGCAAGCGCCAGCAGGCGCTCGTCCAGGTCCAGTATGAAGAGGAGCTGAAGGCCGGCAAGCTGCCGGAGGCGTTC GCGGGCAAGGTGCTCGGGCTGCTGACGCGGCCGGACAAGAATTCGATCGAATACAAGGCGCTCGAGGCGGCGGCCGGCGC GCGCGGCGTGTCGCCGGCGCGGCTGATGCTCGACTGCGGCGGCGTCGCGTCGGCGCGTGCGCTGCACGAGGCGCGTTTCC TCGCAGAATTTTTCCCGCACGGCACGGGCTTTCCGCCCGTCACGGTCGGCCCGCTGCCGGACGACCTGCCGCGCGCGGAC GTCGAGGCGTTCTCGATCGACGACGTCACGACGACCGAAATCGACGATGCGTTCTCGGTCGAGCACCTGGCCGACGGTCG CGTGCGGATCGGCGTGCACATCGCGGCGCCGGCGCTCGGCATCGTGCGCGGCGACGCGGTCGATGCGATCGCCCGTACGC GCCTGTCGACCGTCTACATGCCGGGCGACAAGATCACGATGCTGCCGGACGACGTCGTCGACGTGTTCACGCTGAAGGAG GGCGACTACCGCCCGGCGCTGTCGCTGTACATCATCGTCAACCGCGAGACGCAGGACATCGTCGCGAACGAGACGCGCGC CGAACTCGTGTACGTGAAGAGCAACCTGCGCCACAACACGCTCGACGAGCTCGTCAACGAGGAGACGCTCGCGGCCGGCA CCGGCGACTACCCGCACAAGGACGACATCGCCGTGCTGTGGCCGCTCGCGCAGGCGCTGTTCGAGAAGCGCCAGGTCGCG CGCGCGGGCTATGGCCTGAAGCGCGAGGTGCAGCGCAACACCGACTACAACTTCTACGTCGAAGGCGAGCACGTGACGAT CACGCCGCGTCGCCGCGGGTCGCCGCTCGACCTGATCGTGTCGGAGCTCGCGATCCTCGCGAACTCGACGTGGGGTGCGT TCCTGCACGATCACACGGTGCCGGGCATCTACCGCTCGCAGCGCGGCTTCGGCGCGCCGGGCCCGAAGCGCACGCGGATG CAGACGTCGGCCGCGCCGCACGAAGGCCTCGGCGTCGCGCAGTACGCGTGGAGCACGTCGCCGCTGCGCCGCTACGTCGA CCTCGTGAACCAGTGGCAGCTGCTCGCGTGCGTGCAGCACGGCGTCACCGCGAAGCTCGCCGCGCCGTTCAAGCCGAAGG ACGCCGACCTGTACGCGGTCGTGCAGGGCTTCGACGACACCTATACCGCGTACGCCGACTACCAGCGCCGGATGGAATAC TTCTGGTGCCTGCGCTGGCTCGCGCAGGAGCAGAAGAAGCAGGTCGTCGCGAGCGTCGTGAAGGGCGATCTCGTGCGTCT CGAGGAAATTCCGCTGCTGCTGCACGTGCCGGGGCTCGGCGTGCATGCGCGCGGCACGCGCGTGCTGCTCGACGTGATGT CGCTCGACGAGCTGACGATCGAGGCGTCGGTGCGACTGCTGAACGTGCTCGACGCGCCGACCGTGACGAGCGGCGAGGCG GCCGAGGACGAAGACGAAACCGAAGGCGGCGACGACACGCTGGTCGATGCGGAAGACGCGTCGGCGCAAACCGAGGCCGA AGCGCTGGCCGAATCGGACGGCGCGGCGGCCGAAGGCGGCGATGCCGCGACCGGCAACGGCCAGGCAAGCGAAGAGGGCC GCGCATCATGA
Upstream 100 bases:
>100_bases CGACGACACAACGTCATGAGCCCGGCGTCATGCCGATCGAATTCCCATCATCATGCGGCGCCGCCAATGCGGCGCCCGGC AGTCTGAACGAGAGTACTGA
Downstream 100 bases:
>100_bases CCGCGATCGCGCCGACGAGCGGCGTCGACCGCTACGTGGTGTTCGGCAATCCGGTGGCGCACAGCAAGTCGCCGTTCATC CACGCGCAGTTCGCCGCGCA
Product: ribonuclease II
Products: NA
Alternate protein names: Exoribonuclease II; RNase II; Ribonuclease II [H]
Number of amino acids: Translated: 696; Mature: 696
Protein sequence:
>696_residues MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADTAAQQIDLDFLWECAPAEEFTY TALAAEYFGATYGAVERAALVLRLHGSPVYFRRKGRGQYQRAPEDQLKMALASLERKRQQALVQVQYEEELKAGKLPEAF AGKVLGLLTRPDKNSIEYKALEAAAGARGVSPARLMLDCGGVASARALHEARFLAEFFPHGTGFPPVTVGPLPDDLPRAD VEAFSIDDVTTTEIDDAFSVEHLADGRVRIGVHIAAPALGIVRGDAVDAIARTRLSTVYMPGDKITMLPDDVVDVFTLKE GDYRPALSLYIIVNRETQDIVANETRAELVYVKSNLRHNTLDELVNEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVA RAGYGLKREVQRNTDYNFYVEGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRGFGAPGPKRTRM QTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAVVQGFDDTYTAYADYQRRMEY FWCLRWLAQEQKKQVVASVVKGDLVRLEEIPLLLHVPGLGVHARGTRVLLDVMSLDELTIEASVRLLNVLDAPTVTSGEA AEDEDETEGGDDTLVDAEDASAQTEAEALAESDGAAAEGGDAATGNGQASEEGRAS
Sequences:
>Translated_696_residues MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADTAAQQIDLDFLWECAPAEEFTY TALAAEYFGATYGAVERAALVLRLHGSPVYFRRKGRGQYQRAPEDQLKMALASLERKRQQALVQVQYEEELKAGKLPEAF AGKVLGLLTRPDKNSIEYKALEAAAGARGVSPARLMLDCGGVASARALHEARFLAEFFPHGTGFPPVTVGPLPDDLPRAD VEAFSIDDVTTTEIDDAFSVEHLADGRVRIGVHIAAPALGIVRGDAVDAIARTRLSTVYMPGDKITMLPDDVVDVFTLKE GDYRPALSLYIIVNRETQDIVANETRAELVYVKSNLRHNTLDELVNEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVA RAGYGLKREVQRNTDYNFYVEGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRGFGAPGPKRTRM QTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAVVQGFDDTYTAYADYQRRMEY FWCLRWLAQEQKKQVVASVVKGDLVRLEEIPLLLHVPGLGVHARGTRVLLDVMSLDELTIEASVRLLNVLDAPTVTSGEA AEDEDETEGGDDTLVDAEDASAQTEAEALAESDGAAAEGGDAATGNGQASEEGRAS >Mature_696_residues MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADTAAQQIDLDFLWECAPAEEFTY TALAAEYFGATYGAVERAALVLRLHGSPVYFRRKGRGQYQRAPEDQLKMALASLERKRQQALVQVQYEEELKAGKLPEAF AGKVLGLLTRPDKNSIEYKALEAAAGARGVSPARLMLDCGGVASARALHEARFLAEFFPHGTGFPPVTVGPLPDDLPRAD VEAFSIDDVTTTEIDDAFSVEHLADGRVRIGVHIAAPALGIVRGDAVDAIARTRLSTVYMPGDKITMLPDDVVDVFTLKE GDYRPALSLYIIVNRETQDIVANETRAELVYVKSNLRHNTLDELVNEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVA RAGYGLKREVQRNTDYNFYVEGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRGFGAPGPKRTRM QTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAVVQGFDDTYTAYADYQRRMEY FWCLRWLAQEQKKQVVASVVKGDLVRLEEIPLLLHVPGLGVHARGTRVLLDVMSLDELTIEASVRLLNVLDAPTVTSGEA AEDEDETEGGDDTLVDAEDASAQTEAEALAESDGAAAEGGDAATGNGQASEEGRAS
Specific function: Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction [H]
COG id: COG0557
COG function: function code K; Exoribonuclease R
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI1787542, Length=350, Percent_Identity=27.1428571428571, Blast_Score=83, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011129 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR022967 - InterPro: IPR013223 - InterPro: IPR001900 - InterPro: IPR022966 - InterPro: IPR004476 - InterPro: IPR011804 [H]
Pfam domain/function: PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]
EC number: =3.1.13.1 [H]
Molecular weight: Translated: 76120; Mature: 76120
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADTA CCEEECCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHH AQQIDLDFLWECAPAEEFTYTALAAEYFGATYGAVERAALVLRLHGSPVYFRRKGRGQYQ HHHCCHHHEEECCCCCHHHHHHHHHHHHCCHHHHHHHEEEEEEECCCEEEEEECCCCCCC RAPEDQLKMALASLERKRQQALVQVQYEEELKAGKLPEAFAGKVLGLLTRPDKNSIEYKA CCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCCCHHHHHHHHHEEECCCCCCCCHHH LEAAAGARGVSPARLMLDCGGVASARALHEARFLAEFFPHGTGFPPVTVGPLPDDLPRAD HHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCC VEAFSIDDVTTTEIDDAFSVEHLADGRVRIGVHIAAPALGIVRGDAVDAIARTRLSTVYM CCEEECCCCEECCCCCHHCHHHHCCCEEEEEEEEECCCHHEECCCHHHHHHHHHHEEEEE PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVNRETQDIVANETRAELVYVKSNLRHNT CCCEEEECCCCCEEEEEECCCCCCCEEEEEEEEECCCHHHHCCCCCEEEEEEECCCCCCH LDELVNEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVARAGYGLKREVQRNTDYNFYV HHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEE EGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRGFGAPGPKRTRM ECCEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHCCCCCCCCCCCCCCC QTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAV CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEE VQGFDDTYTAYADYQRRMEYFWCLRWLAQEQKKQVVASVVKGDLVRLEEIPLLLHVPGLG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHCCCCEEEEECCCC VHARGTRVLLDVMSLDELTIEASVRLLNVLDAPTVTSGEAAEDEDETEGGDDTLVDAEDA EECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCC SAQTEAEALAESDGAAAEGGDAATGNGQASEEGRAS CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNVFFEESGSFKAGSVLSRQGDAFQVELPGGRRAKVRAKDVLIEFEKPAASELMQEADTA CCEEECCCCCCCCCCHHCCCCCEEEEECCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHH AQQIDLDFLWECAPAEEFTYTALAAEYFGATYGAVERAALVLRLHGSPVYFRRKGRGQYQ HHHCCHHHEEECCCCCHHHHHHHHHHHHCCHHHHHHHEEEEEEECCCEEEEEECCCCCCC RAPEDQLKMALASLERKRQQALVQVQYEEELKAGKLPEAFAGKVLGLLTRPDKNSIEYKA CCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCCCHHHHHHHHHEEECCCCCCCCHHH LEAAAGARGVSPARLMLDCGGVASARALHEARFLAEFFPHGTGFPPVTVGPLPDDLPRAD HHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCC VEAFSIDDVTTTEIDDAFSVEHLADGRVRIGVHIAAPALGIVRGDAVDAIARTRLSTVYM CCEEECCCCEECCCCCHHCHHHHCCCEEEEEEEEECCCHHEECCCHHHHHHHHHHEEEEE PGDKITMLPDDVVDVFTLKEGDYRPALSLYIIVNRETQDIVANETRAELVYVKSNLRHNT CCCEEEECCCCCEEEEEECCCCCCCEEEEEEEEECCCHHHHCCCCCEEEEEEECCCCCCH LDELVNEETLAAGTGDYPHKDDIAVLWPLAQALFEKRQVARAGYGLKREVQRNTDYNFYV HHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEE EGEHVTITPRRRGSPLDLIVSELAILANSTWGAFLHDHTVPGIYRSQRGFGAPGPKRTRM ECCEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHCCCCCCCCCCCCCCC QTSAAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVQHGVTAKLAAPFKPKDADLYAV CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEE VQGFDDTYTAYADYQRRMEYFWCLRWLAQEQKKQVVASVVKGDLVRLEEIPLLLHVPGLG EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHCCCCEEEEECCCC VHARGTRVLLDVMSLDELTIEASVRLLNVLDAPTVTSGEAAEDEDETEGGDDTLVDAEDA EECCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCC SAQTEAEALAESDGAAAEGGDAATGNGQASEEGRAS CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA