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The map label for this gene is petB [H]

Identifier: 115350415

GI number: 115350415

Start: 399877

End: 401259

Strand: Direct

Name: petB [H]

Synonym: Bamb_0360

Alternate gene names: 115350415

Gene position: 399877-401259 (Clockwise)

Preceding gene: 115350414

Following gene: 115350416

Centisome position: 11.24

GC content: 62.55

Gene sequence:

>1383_bases
ATGGCCGTCGACAACAAGGAAGTCTCCACCACAGGTCTCACCGGCTGGATCGACCAGCGCTTCCCGCTCACGTCCACCTG
GAAGAAGCACGTTTCCGAGTACTACGCGCCGAAGAACTTCAACTTCTGGTACTTCTTCGGCTCCCTCGCGCTACTGGTGC
TCGTCAACCAGATCGTCACGGGCATCTTCCTGACGATGAACTACAAGCCCGACTCGACGCTCGCGTTCGCGTCGGTCGAA
TACATCATGCGCGAGGTGCCGTGGGGCTGGCTGATCCGCTACATGCACTCGACCGGCGCGTCGATGTTCTTCGTCGTCGT
GTACCTGCACATGTTCCGCGGGCTGATGTACGGGTCGTATCGGAAGCCGCGCGAGCTCGTGTGGATCTTCGGCTGCGCGA
TCTTCCTGTGCCTGATGGCCGAGGCGTTCTTCGGCTACCTGCTGCCGTGGGGCCAGATGTCGTTCTGGGGCGCGCAGGTG
ATCGTGAACCTGTTCTCGGCGATTCCATTTGTTGGCCCGGACCTGTCGCTGTGGATCCGCGGCGACTATGTGGTGTCCGA
CGTCACGCTGAACCGCTTCTTCGCGTTCCACGTGATCGCGATTCCGCTCGTTCTGGTCGGCCTCGTGATCGCGCACCTCG
TGGCGCTGCACGAAGTGGGATCGAATAACCCGGACGGCATCGAGATCAAGGCGAAGAAGGACGCGAACGGTATTCCGCTC
GACGGCATCCCGTTCCATCCGTACTACTCGGTGCACGATTTCTTCGGGGTCTGCGTGTTCCTGATGGTGTTCGCGCTGAT
CGTGTTCTTCTCGCCGGAAATGGGCGGCTACTTCCTCGAGTCGAACAACTTCGTGCCGGCGAACCCGCTGCAGACGCCGC
CGGAAATCGCGCCGGTCTGGTATTTCACCGCGTTCTACGCGATGCTGCGCGCGACGACCGACCCGTTCAAGATCGTGCTG
ATGATCGTGATCGCGCTGCTCGGCGTGCTCGCCCTGGTCCGCGCGCGCGGCAAGTGGAAGATCGGCCTGCCGGTGCTGGC
CGCGGCGATCGTCGTGTTCATGTTCCTGACGGAGTCGAAGTTCTGGGGCGTCGTCGTGATGGGCTCGGCGGTGATCACGC
TGTTCTTCCTGCCGTGGCTCGACCGCAGCCCGGTGAAGTCGATCCGGTACCGGCCGTTCTTCCACAAGGTGTTCCTCGGG
ATCTTCGTCGTGGCGTTCCTGACCCTAGCGTTCCTCGGCACACGGCCGCCATCGCCGGTCGCGACGCTGATTGCGCAGGG
CTGTGCGCTGATCTACTTCGCGTTCTTCCTCGGCATGCCCGTCTGGACGCCGCTTGGCACGTTCAAGCAGCCGCCGGAGC
GGGTGCGCTTCAAGCCCCATTAA

Upstream 100 bases:

>100_bases
TCAAGAACAAGCCGGCGCCTCAGAATCTCGACATCCCGCCCTACATGTTCACGTCGGCGACGACCCTCGTGATCGGCAAG
GACGAGAAAGGAGAAGCGTG

Downstream 100 bases:

>100_bases
TGTGAGCGAGGAGAGAACGACATGAAGAAACTGCTTTCGACGCTCGCACTGATCGGGGCGACGGCCGTTGCGCTGCTGGC
GGCGCCGGCCGTGCGCGCGG

Product: cytochrome b/b6 domain-containing protein

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 459

Protein sequence:

>460_residues
MAVDNKEVSTTGLTGWIDQRFPLTSTWKKHVSEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSTLAFASVE
YIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGLMYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQV
IVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLVGLVIAHLVALHEVGSNNPDGIEIKAKKDANGIPL
DGIPFHPYYSVHDFFGVCVFLMVFALIVFFSPEMGGYFLESNNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDPFKIVL
MIVIALLGVLALVRARGKWKIGLPVLAAAIVVFMFLTESKFWGVVVMGSAVITLFFLPWLDRSPVKSIRYRPFFHKVFLG
IFVVAFLTLAFLGTRPPSPVATLIAQGCALIYFAFFLGMPVWTPLGTFKQPPERVRFKPH

Sequences:

>Translated_460_residues
MAVDNKEVSTTGLTGWIDQRFPLTSTWKKHVSEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSTLAFASVE
YIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGLMYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQV
IVNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLVGLVIAHLVALHEVGSNNPDGIEIKAKKDANGIPL
DGIPFHPYYSVHDFFGVCVFLMVFALIVFFSPEMGGYFLESNNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDPFKIVL
MIVIALLGVLALVRARGKWKIGLPVLAAAIVVFMFLTESKFWGVVVMGSAVITLFFLPWLDRSPVKSIRYRPFFHKVFLG
IFVVAFLTLAFLGTRPPSPVATLIAQGCALIYFAFFLGMPVWTPLGTFKQPPERVRFKPH
>Mature_459_residues
AVDNKEVSTTGLTGWIDQRFPLTSTWKKHVSEYYAPKNFNFWYFFGSLALLVLVNQIVTGIFLTMNYKPDSTLAFASVEY
IMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGLMYGSYRKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVI
VNLFSAIPFVGPDLSLWIRGDYVVSDVTLNRFFAFHVIAIPLVLVGLVIAHLVALHEVGSNNPDGIEIKAKKDANGIPLD
GIPFHPYYSVHDFFGVCVFLMVFALIVFFSPEMGGYFLESNNFVPANPLQTPPEIAPVWYFTAFYAMLRATTDPFKIVLM
IVIALLGVLALVRARGKWKIGLPVLAAAIVVFMFLTESKFWGVVVMGSAVITLFFLPWLDRSPVKSIRYRPFFHKVFLGI
FVVAFLTLAFLGTRPPSPVATLIAQGCALIYFAFFLGMPVWTPLGTFKQPPERVRFKPH

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=402, Percent_Identity=38.3084577114428, Blast_Score=253, Evalue=3e-67,
Organism=Saccharomyces cerevisiae, GI6226529, Length=401, Percent_Identity=40.6483790523691, Blast_Score=251, Evalue=2e-67,
Organism=Saccharomyces cerevisiae, GI6226532, Length=241, Percent_Identity=48.9626556016597, Blast_Score=213, Evalue=5e-56,
Organism=Saccharomyces cerevisiae, GI6226531, Length=152, Percent_Identity=53.2894736842105, Blast_Score=153, Evalue=6e-38,
Organism=Saccharomyces cerevisiae, GI6226530, Length=137, Percent_Identity=48.9051094890511, Blast_Score=122, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N [H]

EC number: 1.10.2.2

Molecular weight: Translated: 52112; Mature: 51981

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHCCCCCC
>Mature Secondary Structure 
AVDNKEVSTTGLTGWIDQRFPLTSTWKKHVSEYYAPKNFNFWYFFGSLALLVLVNQIVT
CCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
GIFLTMNYKPDSTLAFASVEYIMREVPWGWLIRYMHSTGASMFFVVVYLHMFRGLMYGSY
HEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
RKPRELVWIFGCAIFLCLMAEAFFGYLLPWGQMSFWGAQVIVNLFSAIPFVGPDLSLWIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEE
GDYVVSDVTLNRFFAFHVIAIPLVLVGLVIAHLVALHEVGSNNPDGIEIKAKKDANGIPL
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
DGIPFHPYYSVHDFFGVCVFLMVFALIVFFSPEMGGYFLESNNFVPANPLQTPPEIAPVW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCHHHHH
YFTAFYAMLRATTDPFKIVLMIVIALLGVLALVRARGKWKIGLPVLAAAIVVFMFLTESK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHCCC
FWGVVVMGSAVITLFFLPWLDRSPVKSIRYRPFFHKVFLGIFVVAFLTLAFLGTRPPSPV
CCHHEEHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
ATLIAQGCALIYFAFFLGMPVWTPLGTFKQPPERVRFKPH
HHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA