Click here to switch to the map view.

The map label for this gene is petA [H]

Identifier: 115350414

GI number: 115350414

Start: 399257

End: 399877

Strand: Direct

Name: petA [H]

Synonym: Bamb_0359

Alternate gene names: 115350414

Gene position: 399257-399877 (Clockwise)

Preceding gene: 115350413

Following gene: 115350415

Centisome position: 11.23

GC content: 63.61

Gene sequence:

>621_bases
ATGCGAGACAAGGAAGAGAAACGCGTCGACAGCGGCCGCCGTACCTGGCTGATTGCGACATCCGTAGCAGGTGGCGTGGG
AGGTGTCGCCACCGTTGTACCTTTCGCGGCGTCGCTTGCGCCGTCCGCGAGAGCGAAAGCGGCCGGTGCGCCGGTCGAGG
TCGACATCAGCAGCCTGAAGCCGGGCGAAATGGTCACCGTGCCGTGGCGCGGCAAGCCCGTCTGGATCCTGAATCGCACT
GATTCGATGCTGGCCGATGTGGTCAAGGCCGATAAGGAAGTGGCCGATCCGACCACGAAATCTCCGTATTCGATGCCGTT
GCCCGCGTATTGCGCGAACGAATATCGCGCGCGGACCGATCGCAAGAACATTCTCGTCGTGATGGCCGTCTGTACGCACC
TCGGCTGCACGCCTAGCCAACGCTTCACGCCGGGTCCGCAGCCGAACCTGCCGGACGACTGGCCGGGCGGTTTCCTGTGC
CCGTGCCACGGTTCGACCTACGACCTCGCCGGTCGCGTGTTCAAGAACAAGCCGGCGCCTCAGAATCTCGACATCCCGCC
CTACATGTTCACGTCGGCGACGACCCTCGTGATCGGCAAGGACGAGAAAGGAGAAGCGTGA

Upstream 100 bases:

>100_bases
TTTTCATCTCCGGGCCTTGTAAATGACGACTCCATTCGAGCAAACTAGCGGCGGAATGGAAAGTCGTGACGGAAAATCCA
ACTCAGAAGTGGGGCGTGTG

Downstream 100 bases:

>100_bases
TGGCCGTCGACAACAAGGAAGTCTCCACCACAGGTCTCACCGGCTGGATCGACCAGCGCTTCCCGCTCACGTCCACCTGG
AAGAAGCACGTTTCCGAGTA

Product: ubiquinol-cytochrome c reductase, iron-sulfur subunit

Products: NA

Alternate protein names: Rieske iron-sulfur protein; RISP [H]

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MRDKEEKRVDSGRRTWLIATSVAGGVGGVATVVPFAASLAPSARAKAAGAPVEVDISSLKPGEMVTVPWRGKPVWILNRT
DSMLADVVKADKEVADPTTKSPYSMPLPAYCANEYRARTDRKNILVVMAVCTHLGCTPSQRFTPGPQPNLPDDWPGGFLC
PCHGSTYDLAGRVFKNKPAPQNLDIPPYMFTSATTLVIGKDEKGEA

Sequences:

>Translated_206_residues
MRDKEEKRVDSGRRTWLIATSVAGGVGGVATVVPFAASLAPSARAKAAGAPVEVDISSLKPGEMVTVPWRGKPVWILNRT
DSMLADVVKADKEVADPTTKSPYSMPLPAYCANEYRARTDRKNILVVMAVCTHLGCTPSQRFTPGPQPNLPDDWPGGFLC
PCHGSTYDLAGRVFKNKPAPQNLDIPPYMFTSATTLVIGKDEKGEA
>Mature_206_residues
MRDKEEKRVDSGRRTWLIATSVAGGVGGVATVVPFAASLAPSARAKAAGAPVEVDISSLKPGEMVTVPWRGKPVWILNRT
DSMLADVVKADKEVADPTTKSPYSMPLPAYCANEYRARTDRKNILVVMAVCTHLGCTPSQRFTPGPQPNLPDDWPGGFLC
PCHGSTYDLAGRVFKNKPAPQNLDIPPYMFTSATTLVIGKDEKGEA

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG0723

COG function: function code C; Rieske Fe-S protein

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Homo sapiens, GI163644321, Length=187, Percent_Identity=30.4812834224599, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17540418, Length=206, Percent_Identity=34.9514563106796, Blast_Score=93, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6320811, Length=198, Percent_Identity=32.8282828282828, Blast_Score=95, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24580896, Length=168, Percent_Identity=36.3095238095238, Blast_Score=97, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR014349
- InterPro:   IPR005805
- InterPro:   IPR019470
- InterPro:   IPR006317 [H]

Pfam domain/function: PF00355 Rieske; PF10399 UCR_Fe-S_N [H]

EC number: =1.10.2.2 [H]

Molecular weight: Translated: 22142; Mature: 22142

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS00199 RIESKE_1 ; PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDKEEKRVDSGRRTWLIATSVAGGVGGVATVVPFAASLAPSARAKAAGAPVEVDISSLK
CCCHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCC
PGEMVTVPWRGKPVWILNRTDSMLADVVKADKEVADPTTKSPYSMPLPAYCANEYRARTD
CCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC
RKNILVVMAVCTHLGCTPSQRFTPGPQPNLPDDWPGGFLCPCHGSTYDLAGRVFKNKPAP
CCCEEEHEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCC
QNLDIPPYMFTSATTLVIGKDEKGEA
CCCCCCCEEECCEEEEEEECCCCCCC
>Mature Secondary Structure
MRDKEEKRVDSGRRTWLIATSVAGGVGGVATVVPFAASLAPSARAKAAGAPVEVDISSLK
CCCHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCC
PGEMVTVPWRGKPVWILNRTDSMLADVVKADKEVADPTTKSPYSMPLPAYCANEYRARTD
CCCEEEECCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC
RKNILVVMAVCTHLGCTPSQRFTPGPQPNLPDDWPGGFLCPCHGSTYDLAGRVFKNKPAP
CCCEEEHEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCC
QNLDIPPYMFTSATTLVIGKDEKGEA
CCCCCCCEEECCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA