Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115350407

Identifier: 115350407

GI number: 115350407

Start: 394323

End: 394715

Strand: Direct

Name: 115350407

Synonym: Bamb_0352

Alternate gene names: NA

Gene position: 394323-394715 (Clockwise)

Preceding gene: 115350406

Following gene: 115350408

Centisome position: 11.09

GC content: 61.58

Gene sequence:

>393_bases
ATGACCGATACGCCGAGCGAGTTTCCGACGCCGTCGCTGCCGGGCGCAGCGGACGCCGAGCGGTTGAAGGGCTTGCGCAC
GCTGACGCACGTGCTGTACGGCCTCTACGCGATTCATTGGCTGACGGGCGGCGTGACCGGCATCATCGCGATCATCATCA
ACTACGTGAAGCGCGACGACGTGGCCGGCACGCAGTACGCCGACCATTTCGAGTGGCAGATCCGCACGTTCTGGCGCGCG
CTGATCGCCTACGTGATCGGCTTCGCGCTGATGTTCGTGGTGGTGGGATTCGTGATCATGTTTGTCACGTGGATCTGGAC
GCTGTACCGTATCATCAAGGGTTGGCTGTACCTGAACGACAACAAGACGCTCGATCCGCAGGCCTGGTTCTGA

Upstream 100 bases:

>100_bases
GCCGCGAGCGCGAAGAAAACGGCGGGTGACGGCTCACGGCCTGCCGCGCCGGCAACAGTGCGGTAAGCTGTAAGAATTGT
CATCTGACGGGGGTAGCATC

Downstream 100 bases:

>100_bases
CCCGCGCGCGGGGCGTTTCGCAGGAGCAACATGAGTCACGATCCGAATTGCCTGTTCTGCAAGATCGCGGCGGGCGAGAT
CCCGAGCGAGAAGGTGCACG

Product: membrane protein

Products: NA

Alternate protein names: DNAJ Domain Protein; Chaperone Protein DNAJ

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MTDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDDVAGTQYADHFEWQIRTFWRA
LIAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLNDNKTLDPQAWF

Sequences:

>Translated_130_residues
MTDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDDVAGTQYADHFEWQIRTFWRA
LIAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLNDNKTLDPQAWF
>Mature_129_residues
TDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDDVAGTQYADHFEWQIRTFWRAL
IAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLNDNKTLDPQAWF

Specific function: Unknown

COG id: COG3671

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14975; Mature: 14843

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDD
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VAGTQYADHFEWQIRTFWRALIAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLND
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
NKTLDPQAWF
CCCCCCCCCC
>Mature Secondary Structure 
TDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDD
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VAGTQYADHFEWQIRTFWRALIAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLND
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
NKTLDPQAWF
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA