Click here to switch to the map view.

The map label for this gene is 115350381

Identifier: 115350381

GI number: 115350381

Start: 372275

End: 372823

Strand: Direct

Name: 115350381

Synonym: Bamb_0326

Alternate gene names: NA

Gene position: 372275-372823 (Clockwise)

Preceding gene: 115350380

Following gene: 115350383

Centisome position: 10.47

GC content: 73.41

Gene sequence:

>549_bases
ATGAACGGCGACCGGCTCCGTGCGTTCGTCGCGCTGATGCCCGATACGGCATCGCGCGACGCGCTGCACGCGCTGCCGGT
CACCCGCGGTGCACGGCGCACGCTGCCCGCGCAACTGCACGTAACGCTTGCGTTCATCGGCGCGATCGAACGTGCGCGGT
GCGACGCGCTGGCCGAGCGGTTGCCGGCGCTCGCGAGCGCGCATGCGCTGCCGTTGCAGCGGGTCGAGCGGATCGCGTGG
TGGCCGAGCCTGCCGCGCGCGCGGCTGATCGTCGCGGAACTCGCCGCCGATCCCGCCTGTACGGCGCTGAATGCCGATTT
ATCCGCGCTATTGCGCGAACTGGGCGTGCCGGCCGACCGCCGGCCGTTCCGGCCGCATGTGACGCTCGCGCGGCTGCCGC
GCGATGCCGACGGACAGCCCGCGCACGGCGGCGCGACCGGCCGGCCGGTCGCGGTGCGCTTCGTCGCGCTGACGCTGTTC
GAAAGCCGGCTGTCGCACGACGGTGTGTCGCATGTGCCGATCGTGTCGGTGCCGATCGGGCGGGCGTAG

Upstream 100 bases:

>100_bases
GCGAGCACGGCCCACTGCCGCTGCGTCCGGCTTCGGCCGATGTGGCGGATGAAGCGGCGAACGACGCGGTGGCCGAAGCC
CGCGTCGCGGTGCGCGAGTC

Downstream 100 bases:

>100_bases
AGGGAAGGGGGGCGAACGAGAGAAGGCCGACGCGGTGTGCGCCGGCCTTTTGTTTTTGCGCTTACGCGGCAACCTTGTCG
GTGTCGGTCACGCGCTCGAC

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNGDRLRAFVALMPDTASRDALHALPVTRGARRTLPAQLHVTLAFIGAIERARCDALAERLPALASAHALPLQRVERIAW
WPSLPRARLIVAELAADPACTALNADLSALLRELGVPADRRPFRPHVTLARLPRDADGQPAHGGATGRPVAVRFVALTLF
ESRLSHDGVSHVPIVSVPIGRA

Sequences:

>Translated_182_residues
MNGDRLRAFVALMPDTASRDALHALPVTRGARRTLPAQLHVTLAFIGAIERARCDALAERLPALASAHALPLQRVERIAW
WPSLPRARLIVAELAADPACTALNADLSALLRELGVPADRRPFRPHVTLARLPRDADGQPAHGGATGRPVAVRFVALTLF
ESRLSHDGVSHVPIVSVPIGRA
>Mature_182_residues
MNGDRLRAFVALMPDTASRDALHALPVTRGARRTLPAQLHVTLAFIGAIERARCDALAERLPALASAHALPLQRVERIAW
WPSLPRARLIVAELAADPACTALNADLSALLRELGVPADRRPFRPHVTLARLPRDADGQPAHGGATGRPVAVRFVALTLF
ESRLSHDGVSHVPIVSVPIGRA

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19557; Mature: 19557

Theoretical pI: Translated: 11.82; Mature: 11.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGDRLRAFVALMPDTASRDALHALPVTRGARRTLPAQLHVTLAFIGAIERARCDALAER
CCCHHEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LPALASAHALPLQRVERIAWWPSLPRARLIVAELAADPACTALNADLSALLRELGVPADR
HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
RPFRPHVTLARLPRDADGQPAHGGATGRPVAVRFVALTLFESRLSHDGVSHVPIVSVPIG
CCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCC
RA
CC
>Mature Secondary Structure
MNGDRLRAFVALMPDTASRDALHALPVTRGARRTLPAQLHVTLAFIGAIERARCDALAER
CCCHHEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LPALASAHALPLQRVERIAWWPSLPRARLIVAELAADPACTALNADLSALLRELGVPADR
HHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
RPFRPHVTLARLPRDADGQPAHGGATGRPVAVRFVALTLFESRLSHDGVSHVPIVSVPIG
CCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCC
RA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA