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The map label for this gene is yaaJ [C]

Identifier: 115350380

GI number: 115350380

Start: 370764

End: 372278

Strand: Direct

Name: yaaJ [C]

Synonym: Bamb_0325

Alternate gene names: 115350380

Gene position: 370764-372278 (Clockwise)

Preceding gene: 162389967

Following gene: 115350381

Centisome position: 10.42

GC content: 67.99

Gene sequence:

>1515_bases
ATGGAAGCATTCGTGCAAGGGCTGATCGATGCCGTCAACGGTGTGCTGTGGAACTACGTGCTGATCGCGCTGCTGCTCGG
CGTGGGCGCGTGGTTCACGCTGCGGTTCCGGATGATCCAGTTGAAGGCGCTGTTCCTCAGCATGAAGCTGGTCGGCAGCA
AGGGCGAGCCGGGCAGCATCTCGTCGTTCCAGGCGTTCGCGACCGGCCTCGCGAGCCGCGTGGGCACCGGCAACATCGCG
GGTGTCGCGGTCGCGCTGACGGTCGGCGGGCCGGGCGCGATCTTCTGGATGTGGATGACGGCGCTCGTCGGCATGTCGTC
CGCGTTCGTCGAGGCGACGCTCGCGCAGATCTTCAAGGTGTCGCATCCGGACGGCAGCTATCGCGGCGGCCCCGCTTACT
ACATCCAGACGGGCCTGCGCTCGCGCGGCTTCGGCGTGCTGTTCTCGCTGTCGCTGATCCTCGCGTTCGGCTTCGTGTTC
AACGCGGTGCAGGCCAATGCGATCGCCGATGCATTTCACACGTCGTTCGGCTGGAGCCGCGAGACCGTCGGCCTCGGCCT
CGTGTTGCTCACCGCGCCGCTCATCTTCGGCGGCATTCGCCGCATCGCGTCGGTCGCGCAGGTGATCGTGCCGGTGATGG
CGATCGGCTACCTCGGGCTGGCCGTCTACGCGGTCGCGACGCACGCGGCGCTGGTGCCGGGCGTGCTCGCGCTGATCGTG
AAGAGTGCGTTCGGGCTCGAGCAGGCGGCGGGCGGCCTGACCGGCTATGCGGTCAGCCAGGCAGTCGCGATGGGGGTGAA
ACGCGGGCTGTTCTCGAACGAAGCCGGCATGGGTAGCGCGCCGAACGCGGCCGCGACCGCGAGCGTGCGGCATCCGGTCG
TGCAGGGGCTGATCCAGATGCTCGGCGTATTCGTCGACACGATCGTGATCTGCAGCGCGACCGCGTTCGTGATCCTGCTG
TCGGGCCAGTACGAGCTCGGCACCGGCATGGAAGGCGCGGCGCTCACGCAGCGCGCGATCGCGAGCCACGTCGGCGGCTG
GGGCAGCATCTACATGGCCGTCGCGATCTTCTTTTTCGCGTACTCGTCGGTGATCGGCAACTACGCGTATGCGGAAGGCA
ACGTCGAGTTCATCACGAAGCGGCGCGGCGTGCTGCCGCTGTTCCGCATCGCGGTGCTGGGGATGGTGATGTTCGGCAGC
GTCGGGCAACTGCCGCTGGTGTGGGCGATGGCCGATACGAGCATGGGGCTGATGGCGATCATCAACCTCGTCGCGATTCT
CGCGCTCGGCAAGTATGCGCATGCCGCGTGGCGCGACTATCGCCACCAGCGCGCGCAGGGCATTGCCGAGCCGGTGTTCA
CGCGCAACACGATTCCCGAGCTCGCACGCGTGCTGCCGGCCGACGTGTGGGGCGAGCACGGCCCACTGCCGCTGCGTCCG
GCTTCGGCCGATGTGGCGGATGAAGCGGCGAACGACGCGGTGGCCGAAGCCCGCGTCGCGGTGCGCGAGTCATGA

Upstream 100 bases:

>100_bases
CAATTCGTAATAATCCTTGGAAACTGTCATATCATGTCGCCCCACCGGCAGCGTTCGCGCGACCGCCGAATATGACTTAC
CCCGTTTACAAGGATTCTGG

Downstream 100 bases:

>100_bases
ACGGCGACCGGCTCCGTGCGTTCGTCGCGCTGATGCCCGATACGGCATCGCGCGACGCGCTGCACGCGCTGCCGGTCACC
CGCGGTGCACGGCGCACGCT

Product: amino acid carrier protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MEAFVQGLIDAVNGVLWNYVLIALLLGVGAWFTLRFRMIQLKALFLSMKLVGSKGEPGSISSFQAFATGLASRVGTGNIA
GVAVALTVGGPGAIFWMWMTALVGMSSAFVEATLAQIFKVSHPDGSYRGGPAYYIQTGLRSRGFGVLFSLSLILAFGFVF
NAVQANAIADAFHTSFGWSRETVGLGLVLLTAPLIFGGIRRIASVAQVIVPVMAIGYLGLAVYAVATHAALVPGVLALIV
KSAFGLEQAAGGLTGYAVSQAVAMGVKRGLFSNEAGMGSAPNAAATASVRHPVVQGLIQMLGVFVDTIVICSATAFVILL
SGQYELGTGMEGAALTQRAIASHVGGWGSIYMAVAIFFFAYSSVIGNYAYAEGNVEFITKRRGVLPLFRIAVLGMVMFGS
VGQLPLVWAMADTSMGLMAIINLVAILALGKYAHAAWRDYRHQRAQGIAEPVFTRNTIPELARVLPADVWGEHGPLPLRP
ASADVADEAANDAVAEARVAVRES

Sequences:

>Translated_504_residues
MEAFVQGLIDAVNGVLWNYVLIALLLGVGAWFTLRFRMIQLKALFLSMKLVGSKGEPGSISSFQAFATGLASRVGTGNIA
GVAVALTVGGPGAIFWMWMTALVGMSSAFVEATLAQIFKVSHPDGSYRGGPAYYIQTGLRSRGFGVLFSLSLILAFGFVF
NAVQANAIADAFHTSFGWSRETVGLGLVLLTAPLIFGGIRRIASVAQVIVPVMAIGYLGLAVYAVATHAALVPGVLALIV
KSAFGLEQAAGGLTGYAVSQAVAMGVKRGLFSNEAGMGSAPNAAATASVRHPVVQGLIQMLGVFVDTIVICSATAFVILL
SGQYELGTGMEGAALTQRAIASHVGGWGSIYMAVAIFFFAYSSVIGNYAYAEGNVEFITKRRGVLPLFRIAVLGMVMFGS
VGQLPLVWAMADTSMGLMAIINLVAILALGKYAHAAWRDYRHQRAQGIAEPVFTRNTIPELARVLPADVWGEHGPLPLRP
ASADVADEAANDAVAEARVAVRES
>Mature_504_residues
MEAFVQGLIDAVNGVLWNYVLIALLLGVGAWFTLRFRMIQLKALFLSMKLVGSKGEPGSISSFQAFATGLASRVGTGNIA
GVAVALTVGGPGAIFWMWMTALVGMSSAFVEATLAQIFKVSHPDGSYRGGPAYYIQTGLRSRGFGVLFSLSLILAFGFVF
NAVQANAIADAFHTSFGWSRETVGLGLVLLTAPLIFGGIRRIASVAQVIVPVMAIGYLGLAVYAVATHAALVPGVLALIV
KSAFGLEQAAGGLTGYAVSQAVAMGVKRGLFSNEAGMGSAPNAAATASVRHPVVQGLIQMLGVFVDTIVICSATAFVILL
SGQYELGTGMEGAALTQRAIASHVGGWGSIYMAVAIFFFAYSSVIGNYAYAEGNVEFITKRRGVLPLFRIAVLGMVMFGS
VGQLPLVWAMADTSMGLMAIINLVAILALGKYAHAAWRDYRHQRAQGIAEPVFTRNTIPELARVLPADVWGEHGPLPLRP
ASADVADEAANDAVAEARVAVRES

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=466, Percent_Identity=41.6309012875536, Blast_Score=348, Evalue=5e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 52856; Mature: 52856

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]