| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350362
Identifier: 115350362
GI number: 115350362
Start: 347891
End: 348814
Strand: Direct
Name: 115350362
Synonym: Bamb_0307
Alternate gene names: NA
Gene position: 347891-348814 (Clockwise)
Preceding gene: 115350360
Following gene: 115350363
Centisome position: 9.78
GC content: 75.43
Gene sequence:
>924_bases ATGACAGCACGATGGGCGGCGCGGTTCGCGCCGGGCAGGCACCGTTCGACGGGCATCGACGTCGGGGCGGACGAGGTGAG AGTAGCCGTGCTGAGCCGGCGCGGCCGGGGCGCGGATGTGCGGGTCGAAGGGCTCGAGCGGGAGCCGGTGGGACTCGCGG ACGGGCCGGAGGACGCGCGCTGGGCCGCGGTCGCGCGGGCGCTGGCGGCCGCCGTGTCGCGGCTGTCGGCGGCAGGCGTG CGCTGCGACGCGCATGGCGTGATGGCGCTGCGCGACGACGAAATGCGCACGGCAACGCTCGACCTGGCCGGGCGCGAGGA CGTCGCCCACGCCGCCCGGCAGGCGGCCGAACGCATCTCGGGGCTGGCGCCGGACAGTTTCGCGTTCGACTGGCGGCAGG AAGGCGGCGAACATTCGGGCGAGATCGCGGTCGCCGTGGCGCCGCAGGCCTTGCTCGAGCGGCGGGTCGACGTGGCCGCG CAGGCCGGCATCGACCTGACGGCCGTCGACGGCGAGTCGGCCGCCGCGCTGCGCGCATTGCGCCATGCCGCGCAGTTCGA GCTCGACGCGCACGGCCCGTACGCCGCATTCTGGTTCGGCGACACGGGTGTGCGCGGCTGGCGGGTCGACGGCCCGGTCG CCGCACCTGTGCTCGCGGTATCCGGCGACGTGCAGGCGGCGCTCCCCGACGCATTGCGCCAGTGCGTATTCGAGCCGGTG CGCTGCGTGCTCGTGGCCGGCGACGCGCGCTGCATCGCCCGCTGCGGTACGTCGGTCGCCGACATCGGAGATGCACTCGG CGTGGCGGCGGTGCCGTTCGACTGCACGGGATGGAACGGGCTGCCGGGCGAGCCCGGCGGTGTGCCGGACGCTGCGGCAT TTGCGCTCGCGGTCGGGCTGGCGCTGCGCGGGGTGTGGGAATGA
Upstream 100 bases:
>100_bases CCACGCCTGGCCGTCCGGCCGACTGTCGGAGGCACGCGCCACTTTGCAGAATCAGGCATCGGAAACGCGGCGTGGGCCGC AACGAGCGCGGGAGGCTGGG
Downstream 100 bases:
>100_bases TGGCCGATACGGGGTTCGGGCGGACTAGCGCCGGCCACGCCGCGCTCGGCGGCTTCAATCTGCTGCCGTACCGGGAGCGG CTGGCGCACGCGTTGCGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MTARWAARFAPGRHRSTGIDVGADEVRVAVLSRRGRGADVRVEGLEREPVGLADGPEDARWAAVARALAAAVSRLSAAGV RCDAHGVMALRDDEMRTATLDLAGREDVAHAARQAAERISGLAPDSFAFDWRQEGGEHSGEIAVAVAPQALLERRVDVAA QAGIDLTAVDGESAAALRALRHAAQFELDAHGPYAAFWFGDTGVRGWRVDGPVAAPVLAVSGDVQAALPDALRQCVFEPV RCVLVAGDARCIARCGTSVADIGDALGVAAVPFDCTGWNGLPGEPGGVPDAAAFALAVGLALRGVWE
Sequences:
>Translated_307_residues MTARWAARFAPGRHRSTGIDVGADEVRVAVLSRRGRGADVRVEGLEREPVGLADGPEDARWAAVARALAAAVSRLSAAGV RCDAHGVMALRDDEMRTATLDLAGREDVAHAARQAAERISGLAPDSFAFDWRQEGGEHSGEIAVAVAPQALLERRVDVAA QAGIDLTAVDGESAAALRALRHAAQFELDAHGPYAAFWFGDTGVRGWRVDGPVAAPVLAVSGDVQAALPDALRQCVFEPV RCVLVAGDARCIARCGTSVADIGDALGVAAVPFDCTGWNGLPGEPGGVPDAAAFALAVGLALRGVWE >Mature_306_residues TARWAARFAPGRHRSTGIDVGADEVRVAVLSRRGRGADVRVEGLEREPVGLADGPEDARWAAVARALAAAVSRLSAAGVR CDAHGVMALRDDEMRTATLDLAGREDVAHAARQAAERISGLAPDSFAFDWRQEGGEHSGEIAVAVAPQALLERRVDVAAQ AGIDLTAVDGESAAALRALRHAAQFELDAHGPYAAFWFGDTGVRGWRVDGPVAAPVLAVSGDVQAALPDALRQCVFEPVR CVLVAGDARCIARCGTSVADIGDALGVAAVPFDCTGWNGLPGEPGGVPDAAAFALAVGLALRGVWE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31835; Mature: 31704
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARWAARFAPGRHRSTGIDVGADEVRVAVLSRRGRGADVRVEGLEREPVGLADGPEDAR CCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHH WAAVARALAAAVSRLSAAGVRCDAHGVMALRDDEMRTATLDLAGREDVAHAARQAAERIS HHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHH GLAPDSFAFDWRQEGGEHSGEIAVAVAPQALLERRVDVAAQAGIDLTAVDGESAAALRAL CCCCCCCEEHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH RHAAQFELDAHGPYAAFWFGDTGVRGWRVDGPVAAPVLAVSGDVQAALPDALRQCVFEPV HHHHHEEEECCCCEEEEEECCCCCCCEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH RCVLVAGDARCIARCGTSVADIGDALGVAAVPFDCTGWNGLPGEPGGVPDAAAFALAVGL EEEEEECCHHHHHHCCCCHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ALRGVWE HHHCCCC >Mature Secondary Structure TARWAARFAPGRHRSTGIDVGADEVRVAVLSRRGRGADVRVEGLEREPVGLADGPEDAR CCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHH WAAVARALAAAVSRLSAAGVRCDAHGVMALRDDEMRTATLDLAGREDVAHAARQAAERIS HHHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHH GLAPDSFAFDWRQEGGEHSGEIAVAVAPQALLERRVDVAAQAGIDLTAVDGESAAALRAL CCCCCCCEEHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH RHAAQFELDAHGPYAAFWFGDTGVRGWRVDGPVAAPVLAVSGDVQAALPDALRQCVFEPV HHHHHEEEECCCCEEEEEECCCCCCCEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH RCVLVAGDARCIARCGTSVADIGDALGVAAVPFDCTGWNGLPGEPGGVPDAAAFALAVGL EEEEEECCHHHHHHCCCCHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH ALRGVWE HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA