| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350363
Identifier: 115350363
GI number: 115350363
Start: 348814
End: 349443
Strand: Direct
Name: 115350363
Synonym: Bamb_0308
Alternate gene names: NA
Gene position: 348814-349443 (Clockwise)
Preceding gene: 115350362
Following gene: 115350364
Centisome position: 9.81
GC content: 72.86
Gene sequence:
>630_bases ATGGCCGATACGGGGTTCGGGCGGACTAGCGCCGGCCACGCCGCGCTCGGCGGCTTCAATCTGCTGCCGTACCGGGAGCG GCTGGCGCACGCGTTGCGGCGGCGCCGTGCCACGCAGTGCGGAGCAGCGATCGTGCTCGGCGTATTCGGGGCCTGCGTGT GGACGGGCGCGCAGACTATGTGGAGATGGGGCGTGGATGCCGAGCGTGCGCGTGTGGAGGCGCAACTGCGGCAATTGGAG CCCAAGGTCGCGGCCGTCCGGCGCGCCGCCGGCGTGGCCGCCGACCTCGCGCAACGCGATGCGCGGTCGGTCGTGCTTGC CGCGCCTTACCGGCGTGCCACGGGGCTGCTTGTGACGCTGGCTCAGGTGCGCGACGACACCGTGCGGCTCGACGCATTGC GCACGACTTCGTCGGGCGCCGTGCTCGACGCGCGCGCGACGAGTTACCGGGCGGCCGCGCGGTGGCTCGCGCGGATCGCG GCCGAGCAGCGCGACTGGCGATTCGATATCGGAGAGCTGACACAGGCTTCGGCCATGCCGGTCACGGCGTCAGCCGCGCC GTTCCGGTTTTCCGTACAGGTGCGCTGGCACGACGCGTCGCCGCAAGGCGCAGCGGGAGGCGGCGCATGA
Upstream 100 bases:
>100_bases GCACGGGATGGAACGGGCTGCCGGGCGAGCCCGGCGGTGTGCCGGACGCTGCGGCATTTGCGCTCGCGGTCGGGCTGGCG CTGCGCGGGGTGTGGGAATG
Downstream 100 bases:
>100_bases CGGCGATCGTGCATAGGTCCGTGCCGCGCGTTGCCGGGGCGCTTGGCCACGTGACGCGGGTGTCGCCGGCCACCGCGCAC GCCGTCGGCTGCGTGGTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Type IV Pilus Assembly Protein
Number of amino acids: Translated: 209; Mature: 208
Protein sequence:
>209_residues MADTGFGRTSAGHAALGGFNLLPYRERLAHALRRRRATQCGAAIVLGVFGACVWTGAQTMWRWGVDAERARVEAQLRQLE PKVAAVRRAAGVAADLAQRDARSVVLAAPYRRATGLLVTLAQVRDDTVRLDALRTTSSGAVLDARATSYRAAARWLARIA AEQRDWRFDIGELTQASAMPVTASAAPFRFSVQVRWHDASPQGAAGGGA
Sequences:
>Translated_209_residues MADTGFGRTSAGHAALGGFNLLPYRERLAHALRRRRATQCGAAIVLGVFGACVWTGAQTMWRWGVDAERARVEAQLRQLE PKVAAVRRAAGVAADLAQRDARSVVLAAPYRRATGLLVTLAQVRDDTVRLDALRTTSSGAVLDARATSYRAAARWLARIA AEQRDWRFDIGELTQASAMPVTASAAPFRFSVQVRWHDASPQGAAGGGA >Mature_208_residues ADTGFGRTSAGHAALGGFNLLPYRERLAHALRRRRATQCGAAIVLGVFGACVWTGAQTMWRWGVDAERARVEAQLRQLEP KVAAVRRAAGVAADLAQRDARSVVLAAPYRRATGLLVTLAQVRDDTVRLDALRTTSSGAVLDARATSYRAAARWLARIAA EQRDWRFDIGELTQASAMPVTASAAPFRFSVQVRWHDASPQGAAGGGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22425; Mature: 22294
Theoretical pI: Translated: 11.85; Mature: 11.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTGFGRTSAGHAALGGFNLLPYRERLAHALRRRRATQCGAAIVLGVFGACVWTGAQTM CCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH WRWGVDAERARVEAQLRQLEPKVAAVRRAAGVAADLAQRDARSVVLAAPYRRATGLLVTL HHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHH AQVRDDTVRLDALRTTSSGAVLDARATSYRAAARWLARIAAEQRDWRFDIGELTQASAMP HHHCCCCEEEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC VTASAAPFRFSVQVRWHDASPQGAAGGGA EECCCCCEEEEEEEEEECCCCCCCCCCCC >Mature Secondary Structure ADTGFGRTSAGHAALGGFNLLPYRERLAHALRRRRATQCGAAIVLGVFGACVWTGAQTM CCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH WRWGVDAERARVEAQLRQLEPKVAAVRRAAGVAADLAQRDARSVVLAAPYRRATGLLVTL HHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHH AQVRDDTVRLDALRTTSSGAVLDARATSYRAAARWLARIAAEQRDWRFDIGELTQASAMP HHHCCCCEEEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCC VTASAAPFRFSVQVRWHDASPQGAAGGGA EECCCCCEEEEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA