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The map label for this gene is rbsC [H]

Identifier: 116249420

GI number: 116249420

Start: 825061

End: 826053

Strand: Direct

Name: rbsC [H]

Synonym: pRL120758

Alternate gene names: 116249420

Gene position: 825061-826053 (Clockwise)

Preceding gene: 116249419

Following gene: 116249421

Centisome position: 94.83

GC content: 61.03

Gene sequence:

>993_bases
ATGGCGGACGCTACATTGGCAACGGCACATCAGGCACGCGCGCCCGGCTGGAAACGGCTGGGGACGATGCGCGAGGCGGG
ACTGATCGCGATCATCCTGGCGCTCTGCATCGTCATGAGTTTTGCCTCGCCGCATTTTCTGACGCTCGGCAACTTCCGGG
CGATGCTGATGTCGTTCTCGGTGGAAGGGATCGTCGTCGTCGGCATGACCATCCTGTTGATCGTCGGCGGCATCGACCTG
TCGGTCGGCTCGGTCGTCTGCTTCTCGATGGTGCTGTCGGGCTCGCTGTTCCTGATGGGGCTCGATCCGTGGAGCGCATC
TCTGATCGGCATTCTTGCCAGCGGCCTGATCGGCTGTGCCATGGGCTTCTTCGTCACGGTCGTCGGGCTCAATCACTTCA
TCACCTCGCTTGCGGCGATGGTCATCGTGCGCGGTATCTGCCTGATCATCACCAAGGGCACGCCGCTGTCGCTGTTCACC
TTGCCACCCTCGTTCAAGGCGGTCGGGCAGGGCACATTCTATGGCGTCCCCTATGTGATCCTGATTTTTGTTGCGGTCGT
CGTGCTGTTCGATTTCCTGCTGCGCCGGGCAACCGCCTTCCGCAAGGTGTTCTACACCGGCAGCAACGAGAAGGCGGCGC
TCTATTCCGGTATCAAGACCAACCAGGTGAAGTTCTGGGTGACGGTGCTCTGCGCCACGCTGTCCGGTGTCGCCGGGGTG
ATCTACATGTCCCGCTTCGGTGCCGCGACCCCGACCTTTGGCGTCGGCATGGAACTCAACATCATCGCAGCCGCGGTGAT
CGGCGGTGCGTCGCTGAATGGCGGCTCCGGCACGATCCTGGGCGCAATCCTCGGTATTGCCCTGCTGTCGGTCGTAACAA
GCTCATTGATCTTGCTCGACGTGTCTGTCTATTGGCAAGACATGATCAAAGGCTGCATTCTGCTTGCCGCCGTCTCGATC
GACCATTTCCTGCACAAGCGGAAGGCTGCCTGA

Upstream 100 bases:

>100_bases
GAAGCGATCATGCGGCTCGCCTCGGGTATCGGCGGTCACAACAATTCAAAGGCATCAGAGCATGCCGCATAGGGAAAAAG
CAGGGGCAGGAGACAGGGTC

Downstream 100 bases:

>100_bases
TATGCCGATAGCCAAGCTCAAACCCGCAAATGCGCCGCGCGAGGAAATCGTCATCGCCCGGCAGATGCACCAGGCTCTGG
TCCTGCATTTCCTCGAGGGA

Product: putative permease component of ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MADATLATAHQARAPGWKRLGTMREAGLIAIILALCIVMSFASPHFLTLGNFRAMLMSFSVEGIVVVGMTILLIVGGIDL
SVGSVVCFSMVLSGSLFLMGLDPWSASLIGILASGLIGCAMGFFVTVVGLNHFITSLAAMVIVRGICLIITKGTPLSLFT
LPPSFKAVGQGTFYGVPYVILIFVAVVVLFDFLLRRATAFRKVFYTGSNEKAALYSGIKTNQVKFWVTVLCATLSGVAGV
IYMSRFGAATPTFGVGMELNIIAAAVIGGASLNGGSGTILGAILGIALLSVVTSSLILLDVSVYWQDMIKGCILLAAVSI
DHFLHKRKAA

Sequences:

>Translated_330_residues
MADATLATAHQARAPGWKRLGTMREAGLIAIILALCIVMSFASPHFLTLGNFRAMLMSFSVEGIVVVGMTILLIVGGIDL
SVGSVVCFSMVLSGSLFLMGLDPWSASLIGILASGLIGCAMGFFVTVVGLNHFITSLAAMVIVRGICLIITKGTPLSLFT
LPPSFKAVGQGTFYGVPYVILIFVAVVVLFDFLLRRATAFRKVFYTGSNEKAALYSGIKTNQVKFWVTVLCATLSGVAGV
IYMSRFGAATPTFGVGMELNIIAAAVIGGASLNGGSGTILGAILGIALLSVVTSSLILLDVSVYWQDMIKGCILLAAVSI
DHFLHKRKAA
>Mature_329_residues
ADATLATAHQARAPGWKRLGTMREAGLIAIILALCIVMSFASPHFLTLGNFRAMLMSFSVEGIVVVGMTILLIVGGIDLS
VGSVVCFSMVLSGSLFLMGLDPWSASLIGILASGLIGCAMGFFVTVVGLNHFITSLAAMVIVRGICLIITKGTPLSLFTL
PPSFKAVGQGTFYGVPYVILIFVAVVVLFDFLLRRATAFRKVFYTGSNEKAALYSGIKTNQVKFWVTVLCATLSGVAGVI
YMSRFGAATPTFGVGMELNIIAAAVIGGASLNGGSGTILGAILGIALLSVVTSSLILLDVSVYWQDMIKGCILLAAVSID
HFLHKRKAA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=302, Percent_Identity=35.0993377483444, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI145693152, Length=304, Percent_Identity=33.8815789473684, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1790524, Length=311, Percent_Identity=32.1543408360129, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=30.6451612903226, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789992, Length=367, Percent_Identity=29.4277929155313, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI87082395, Length=268, Percent_Identity=30.9701492537313, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=30.4195804195804, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=30.8157099697885, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787794, Length=311, Percent_Identity=25.7234726688103, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693214, Length=241, Percent_Identity=27.8008298755187, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34612; Mature: 34481

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADATLATAHQARAPGWKRLGTMREAGLIAIILALCIVMSFASPHFLTLGNFRAMLMSFS
CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHC
VEGIVVVGMTILLIVGGIDLSVGSVVCFSMVLSGSLFLMGLDPWSASLIGILASGLIGCA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH
MGFFVTVVGLNHFITSLAAMVIVRGICLIITKGTPLSLFTLPPSFKAVGQGTFYGVPYVI
HHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCEEEEECCCCHHHHCCCCCCHHHHHH
LIFVAVVVLFDFLLRRATAFRKVFYTGSNEKAALYSGIKTNQVKFWVTVLCATLSGVAGV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
IYMSRFGAATPTFGVGMELNIIAAAVIGGASLNGGSGTILGAILGIALLSVVTSSLILLD
HHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VSVYWQDMIKGCILLAAVSIDHFLHKRKAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ADATLATAHQARAPGWKRLGTMREAGLIAIILALCIVMSFASPHFLTLGNFRAMLMSFS
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHC
VEGIVVVGMTILLIVGGIDLSVGSVVCFSMVLSGSLFLMGLDPWSASLIGILASGLIGCA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHH
MGFFVTVVGLNHFITSLAAMVIVRGICLIITKGTPLSLFTLPPSFKAVGQGTFYGVPYVI
HHHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCEEEEECCCCHHHHCCCCCCHHHHHH
LIFVAVVVLFDFLLRRATAFRKVFYTGSNEKAALYSGIKTNQVKFWVTVLCATLSGVAGV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHH
IYMSRFGAATPTFGVGMELNIIAAAVIGGASLNGGSGTILGAILGIALLSVVTSSLILLD
HHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VSVYWQDMIKGCILLAAVSIDHFLHKRKAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]