| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116249334
Identifier: 116249334
GI number: 116249334
Start: 722613
End: 723626
Strand: Reverse
Name: 116249334
Synonym: pRL120671
Alternate gene names: NA
Gene position: 723626-722613 (Counterclockwise)
Preceding gene: 116249335
Following gene: 116249333
Centisome position: 83.17
GC content: 60.16
Gene sequence:
>1014_bases ATGCGTTCTTCACGCAGCCTTTTTCACACCGTCGCTTTTTCGGCGCTTCTCGCCGCAGCATCTTTCGCGACCAGCGCCGC ACATGCGGCCGATAAGATCACCATCATGGTCGGCGGCTATGAAAAGCAGATCTATCTGCCCGCCAAGCTTGCCGAATCGC TCGGATATTTCAAGGACGAGGGTCTCGACGTCGAACTCCTGAACGAAGCTGCCGGCGTCGATGCCGAAAACCAGCTTCTG GCCGGCGCCGTCCAGGGCGTGGTCGGCTTCTACGACCATTGCGTGGACCTGCAGGCCAAAGGCAAATTCGTCGAATCCAT CGTCCAGTTCAGCCAGGCGCCGGGCGAAGTCGAGATGGTTTCGAGCAAGTATCCTGACATCAAATCTCCAGCCGACTTCA AAGGTAAGACCCTCGGCGTCACCGGTCTCGGCTCGTCCACCAACTTCCTGACCCTCTTCATGGCCTCGAAGGCCGGCCTG AAGCCCGGCGACGTCGTGACGGTTCCAGTCGGCGCCGGTGGCACCTTCATCGCGGCCATGCAACAGGATCAGATCCAGGC CGGCATGACGACCGAGCCGACGATCTCGCGCATGATCAAGACCGGCGAGGCAAGCGTGCTTGTCGATATGCGCACGGTCG AGTCGACCCGCCAGGCGCTCGGTGGCACCTATCCGGCCGCCTCGCTCTACATGGAAGCCTCCTGGGTCGACGCGCACAAG GAAGAGGCACAGAAGCTCGCCAACGCCTTCGTCAAGACGCTGCGCTACATCAACACGCATTCCGCCGCCGAGATCGCGGA CAAGATGCCGAAGGACTTCTACGTCGGCGACAAGGACGGCTACATCAAGGCTCTCGACGACGGCAAGGGCATGTTCACAC CCGATGGCGTCATGCCGGAAGACGGTCCGAAGACCGTACTTGCCGTGCTCTCGGAGTTCTCCAAGAACGTCAAGGGCAAG CAGATCGACCTTTCCAAGACCTACACGACGGAATTCGTCAAGAACGTCAAGTAA
Upstream 100 bases:
>100_bases GTTGAAAGCTTCGACGTCATAGGAAGGGGCAGCATCGTGGAGGAGACACGGGTCAAGGTGGCGAGACGACGATGCTAGCA AACCACAGGAGGAGATTTCC
Downstream 100 bases:
>100_bases GGCGTCGCATCGCTTCCGGCTCCAGCCGGAAGCGACCTCCCGATCGATCCATGGGCATTGCGTGCACGCGCCCAAAGCAC GCCTCAGGTATCATCATGCA
Product: putative substrate-binding component of ABC transporter
Products: NA
Alternate protein names: NMT1/THI5-Like Domain-Containing Protein; Signal Peptide Protein; Amino Acid ABC Transporter; NMT1/THI5 Like Domain-Containing Protein; Twin-Arginine Translocation Pathway Signal; Twin-Arginine Translocation Pathway Signal Protein; ABC Transporter Protein
Number of amino acids: Translated: 337; Mature: 337
Protein sequence:
>337_residues MRSSRSLFHTVAFSALLAAASFATSAAHAADKITIMVGGYEKQIYLPAKLAESLGYFKDEGLDVELLNEAAGVDAENQLL AGAVQGVVGFYDHCVDLQAKGKFVESIVQFSQAPGEVEMVSSKYPDIKSPADFKGKTLGVTGLGSSTNFLTLFMASKAGL KPGDVVTVPVGAGGTFIAAMQQDQIQAGMTTEPTISRMIKTGEASVLVDMRTVESTRQALGGTYPAASLYMEASWVDAHK EEAQKLANAFVKTLRYINTHSAAEIADKMPKDFYVGDKDGYIKALDDGKGMFTPDGVMPEDGPKTVLAVLSEFSKNVKGK QIDLSKTYTTEFVKNVK
Sequences:
>Translated_337_residues MRSSRSLFHTVAFSALLAAASFATSAAHAADKITIMVGGYEKQIYLPAKLAESLGYFKDEGLDVELLNEAAGVDAENQLL AGAVQGVVGFYDHCVDLQAKGKFVESIVQFSQAPGEVEMVSSKYPDIKSPADFKGKTLGVTGLGSSTNFLTLFMASKAGL KPGDVVTVPVGAGGTFIAAMQQDQIQAGMTTEPTISRMIKTGEASVLVDMRTVESTRQALGGTYPAASLYMEASWVDAHK EEAQKLANAFVKTLRYINTHSAAEIADKMPKDFYVGDKDGYIKALDDGKGMFTPDGVMPEDGPKTVLAVLSEFSKNVKGK QIDLSKTYTTEFVKNVK >Mature_337_residues MRSSRSLFHTVAFSALLAAASFATSAAHAADKITIMVGGYEKQIYLPAKLAESLGYFKDEGLDVELLNEAAGVDAENQLL AGAVQGVVGFYDHCVDLQAKGKFVESIVQFSQAPGEVEMVSSKYPDIKSPADFKGKTLGVTGLGSSTNFLTLFMASKAGL KPGDVVTVPVGAGGTFIAAMQQDQIQAGMTTEPTISRMIKTGEASVLVDMRTVESTRQALGGTYPAASLYMEASWVDAHK EEAQKLANAFVKTLRYINTHSAAEIADKMPKDFYVGDKDGYIKALDDGKGMFTPDGVMPEDGPKTVLAVLSEFSKNVKGK QIDLSKTYTTEFVKNVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36001; Mature: 36001
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSSRSLFHTVAFSALLAAASFATSAAHAADKITIMVGGYEKQIYLPAKLAESLGYFKDE CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEHHHHHHHCCCHHCC GLDVELLNEAAGVDAENQLLAGAVQGVVGFYDHCVDLQAKGKFVESIVQFSQAPGEVEMV CCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEH SSKYPDIKSPADFKGKTLGVTGLGSSTNFLTLFMASKAGLKPGDVVTVPVGAGGTFIAAM HCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCEEEEE QQDQIQAGMTTEPTISRMIKTGEASVLVDMRTVESTRQALGGTYPAASLYMEASWVDAHK CHHHHHCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHH EEAQKLANAFVKTLRYINTHSAAEIADKMPKDFYVGDKDGYIKALDDGKGMFTPDGVMPE HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCC DGPKTVLAVLSEFSKNVKGKQIDLSKTYTTEFVKNVK CCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHCCC >Mature Secondary Structure MRSSRSLFHTVAFSALLAAASFATSAAHAADKITIMVGGYEKQIYLPAKLAESLGYFKDE CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEHHHHHHHCCCHHCC GLDVELLNEAAGVDAENQLLAGAVQGVVGFYDHCVDLQAKGKFVESIVQFSQAPGEVEMV CCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEH SSKYPDIKSPADFKGKTLGVTGLGSSTNFLTLFMASKAGLKPGDVVTVPVGAGGTFIAAM HCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCEEEEE QQDQIQAGMTTEPTISRMIKTGEASVLVDMRTVESTRQALGGTYPAASLYMEASWVDAHK CHHHHHCCCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCHHHEEEHHHHHHHH EEAQKLANAFVKTLRYINTHSAAEIADKMPKDFYVGDKDGYIKALDDGKGMFTPDGVMPE HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCC DGPKTVLAVLSEFSKNVKGKQIDLSKTYTTEFVKNVK CCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA