| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
Click here to switch to the map view.
The map label for this gene is 116249296
Identifier: 116249296
GI number: 116249296
Start: 688492
End: 688845
Strand: Reverse
Name: 116249296
Synonym: pRL120631
Alternate gene names: NA
Gene position: 688845-688492 (Counterclockwise)
Preceding gene: 116249297
Following gene: 116249295
Centisome position: 79.18
GC content: 63.28
Gene sequence:
>354_bases ATGTCCCTCCTCAAGACGATCGACACCAACCCGACCTTCGCGCCGCGCGAGTCCGGCCCCCTCCCCGAACGGCTGATCTC GGGCAATCCGGCCTTCAAAACCTGGGCGCAGGACGTTGCCCGCGGCGAGACGGTTCATAGCGGCGTGTGGGAAGCGACAC CCGGCGAGACGCGCTCGATCAAGGGTGAGACGTTCGAGTTCTGCCATATCCTTTCCGGCCTGATCGAACTCACGCCGGAA GGTGGCGAACCGGTGGTCTACAAGGCCGGCGACAGCTTCGTCATGAAGCCGGGCTTCGTTGGCGTCTGGAAGACGATCGA GACGGTACGCAAGATCTACGTGACCGTGACGTGA
Upstream 100 bases:
>100_bases TCATCGCCAACATCAAGCGGCACCAGGCCGGCGTCGATCCGATCGGCCTGGTCGATCGCAACCGCGGCTACTGAGTTCTC AACCTAGGAAAAGCAAAATC
Downstream 100 bases:
>100_bases CGCCGTAGATTTGACTGTGGCGGCGGCGAAAACGCAATTTTTCGCCGCTGCGGCATCGCCGGTCGACGCATGCTGCTCGG GTTCCCCGGTTAGGCTTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 117; Mature: 116
Protein sequence:
>117_residues MSLLKTIDTNPTFAPRESGPLPERLISGNPAFKTWAQDVARGETVHSGVWEATPGETRSIKGETFEFCHILSGLIELTPE GGEPVVYKAGDSFVMKPGFVGVWKTIETVRKIYVTVT
Sequences:
>Translated_117_residues MSLLKTIDTNPTFAPRESGPLPERLISGNPAFKTWAQDVARGETVHSGVWEATPGETRSIKGETFEFCHILSGLIELTPE GGEPVVYKAGDSFVMKPGFVGVWKTIETVRKIYVTVT >Mature_116_residues SLLKTIDTNPTFAPRESGPLPERLISGNPAFKTWAQDVARGETVHSGVWEATPGETRSIKGETFEFCHILSGLIELTPEG GEPVVYKAGDSFVMKPGFVGVWKTIETVRKIYVTVT
Specific function: Unknown
COG id: COG3450
COG function: function code R; Predicted enzyme of the cupin superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12810; Mature: 12679
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLKTIDTNPTFAPRESGPLPERLISGNPAFKTWAQDVARGETVHSGVWEATPGETRSI CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC KGETFEFCHILSGLIELTPEGGEPVVYKAGDSFVMKPGFVGVWKTIETVRKIYVTVT CCCHHHHHHHHHHHHEECCCCCCEEEEECCCCEEECCCCHHHHHHHHHHHHEEEEEC >Mature Secondary Structure SLLKTIDTNPTFAPRESGPLPERLISGNPAFKTWAQDVARGETVHSGVWEATPGETRSI CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC KGETFEFCHILSGLIELTPEGGEPVVYKAGDSFVMKPGFVGVWKTIETVRKIYVTVT CCCHHHHHHHHHHHHEECCCCCCEEEEECCCCEEECCCCHHHHHHHHHHHHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA