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The map label for this gene is chrR [H]

Identifier: 116249246

GI number: 116249246

Start: 632672

End: 633325

Strand: Direct

Name: chrR [H]

Synonym: pRL120581

Alternate gene names: 116249246

Gene position: 632672-633325 (Clockwise)

Preceding gene: 116249245

Following gene: 116249248

Centisome position: 72.72

GC content: 57.03

Gene sequence:

>654_bases
ATGATTGAACACCATCTGGATGACGACATGCTCCTGCACTACTCCGCCGGGACACTGGCGGAGGGTTGGAGCGTCGCAGT
TGCGACCCACCTCGCACTTTGCCCGTTATGCCGCACGAATCTTGCGATGCTCGAAAACGTGGGGGGCTACTTTCTTGAAT
CCCAAGACGCAGGCAAAGACGATGTGACAGCAAGCTGGCAAAGCCTCCGAGCGAGGATTGAAGCTGGTGAGATCGAGAAA
GTCGTGCCAATCAAGAAGCACACAGCCGCCAACAACACTTACCCCGAGCCACTGAGGTCTTATATCGAGCAAGCTGGCGG
GTTGAAGTGGCGCAGACTGGGTCGCGGCGCAGCGCAGATGATTATACCGACCGACGACAATACGACGACCGTCCGATTGC
TGAAGATTCCTGCCGGTCAGCCCGTTCCGGAACATTCCCACGAGGGCTCTGAACTGACGCTTGTTCTCGATGGCAGCTTC
AGCGATGAAGTCTCGACGTTCGCGCGAGGCGACGTCGAAATGGCAGATGGCGATCTCATGCATCAGCCACGAGCCAGCGC
CGGAAAAGACTGCATATGTCTTGCCGTCACTGACGCGCCTCTGCGCTTCAAAAGCAGGTTTGTGCGCTGGCTGCAACCTT
TGTTGGGAATCTGA

Upstream 100 bases:

>100_bases
CAATGATAGCAGAAAGACTAAACCTCCCACTTGGAACGGTAAAATCGAGGATACGGCTTGCATGCGAGAAATTGCGGATG
GCGATTCAGGACGATGCCAA

Downstream 100 bases:

>100_bases
TCGTCAATAGAAATCACGACGTCGAGAAGCACACAGAAGAGCGCCTTTGAGGTGCCGGGACGCTATGGCGTCCCGGCTTT
CTATTGCAAGATCAGTCGGT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIEHHLDDDMLLHYSAGTLAEGWSVAVATHLALCPLCRTNLAMLENVGGYFLESQDAGKDDVTASWQSLRARIEAGEIEK
VVPIKKHTAANNTYPEPLRSYIEQAGGLKWRRLGRGAAQMIIPTDDNTTTVRLLKIPAGQPVPEHSHEGSELTLVLDGSF
SDEVSTFARGDVEMADGDLMHQPRASAGKDCICLAVTDAPLRFKSRFVRWLQPLLGI

Sequences:

>Translated_217_residues
MIEHHLDDDMLLHYSAGTLAEGWSVAVATHLALCPLCRTNLAMLENVGGYFLESQDAGKDDVTASWQSLRARIEAGEIEK
VVPIKKHTAANNTYPEPLRSYIEQAGGLKWRRLGRGAAQMIIPTDDNTTTVRLLKIPAGQPVPEHSHEGSELTLVLDGSF
SDEVSTFARGDVEMADGDLMHQPRASAGKDCICLAVTDAPLRFKSRFVRWLQPLLGI
>Mature_217_residues
MIEHHLDDDMLLHYSAGTLAEGWSVAVATHLALCPLCRTNLAMLENVGGYFLESQDAGKDDVTASWQSLRARIEAGEIEK
VVPIKKHTAANNTYPEPLRSYIEQAGGLKWRRLGRGAAQMIIPTDDNTTTVRLLKIPAGQPVPEHSHEGSELTLVLDGSF
SDEVSTFARGDVEMADGDLMHQPRASAGKDCICLAVTDAPLRFKSRFVRWLQPLLGI

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23803; Mature: 23803

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEHHLDDDMLLHYSAGTLAEGWSVAVATHLALCPLCRTNLAMLENVGGYFLESQDAGKD
CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
DVTASWQSLRARIEAGEIEKVVPIKKHTAANNTYPEPLRSYIEQAGGLKWRRLGRGAAQM
HHHHHHHHHHHHHCCCCCCEECCCHHHCCCCCCCCHHHHHHHHHHCCCEEEHHCCCCEEE
IIPTDDNTTTVRLLKIPAGQPVPEHSHEGSELTLVLDGSFSDEVSTFARGDVEMADGDLM
EEECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCEECCCCCC
HQPRASAGKDCICLAVTDAPLRFKSRFVRWLQPLLGI
CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIEHHLDDDMLLHYSAGTLAEGWSVAVATHLALCPLCRTNLAMLENVGGYFLESQDAGKD
CCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
DVTASWQSLRARIEAGEIEKVVPIKKHTAANNTYPEPLRSYIEQAGGLKWRRLGRGAAQM
HHHHHHHHHHHHHCCCCCCEECCCHHHCCCCCCCCHHHHHHHHHHCCCEEEHHCCCCEEE
IIPTDDNTTTVRLLKIPAGQPVPEHSHEGSELTLVLDGSFSDEVSTFARGDVEMADGDLM
EEECCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCEECCCCCC
HQPRASAGKDCICLAVTDAPLRFKSRFVRWLQPLLGI
CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]