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The map label for this gene is araQ [H]

Identifier: 116249222

GI number: 116249222

Start: 607031

End: 607909

Strand: Direct

Name: araQ [H]

Synonym: pRL120558

Alternate gene names: 116249222

Gene position: 607031-607909 (Clockwise)

Preceding gene: 116249221

Following gene: 116249223

Centisome position: 69.77

GC content: 62.12

Gene sequence:

>879_bases
TTGACCCAGCCCGTCCCGCTGGCAATCGCAAGGGGCAACGGCAAGAGAAGCCTGCGCATCGTGCAGAGCCTCTGCATCCT
GGTCATCGCGCTGGTGATGATCTCGCCGCTGTTCATGCTGCTGATCGCCAGCCTGAAGGACGACCGCTTCCGCATCCTCG
CCGACATGGGCAGCTTCCGCGCCTTCTGGGTGAGCGACCCGACCCTGTCGAACTACAAGGAGATCGCCCATTTCTCCGGC
GAGCTGGCCTATGGCCGATATCTCTTCAATTCGCTGGTGATCCTCGGCGCCACAGTCGTCTCGGGACTGGTCGTCAATTC
CATGGCGGGCTTCGTTCTCGCCTGGGGCTCGCTGCGCGGCAAGGCGGCGCTCTTGGCGCTGGTCGTCGCGCTCTATGTCA
TCCCGCAGGAAAGCATCATCATGCCGCTCGTCGTCATGATGTCGCGGGCGGGGCTGACGGATACCTTCGCGGTGCAGATC
CTGCCCTGGGTGGCAAGCCCGCTCTATGTCTTCCTCTTCTACCAGTTCTTCGCGCAGCTGCCGAAAGAACTCTATGAAGC
GGCGGAAATGGACGGCGCGTCGGCCTTCCGCATCTACCGGTCGATCTACATGCCTCTCAGCCTGCCGGCGCTCGCCACGG
TCTCGATCCTCATGGGCATCGAAAGCTGGAACCAGTATCTCTGGCCGACGCTGGTCACCCAGACCGACTATGCTCGGCCG
ATTGCCGTCGCCATCGCCACCTTCTTCGGACAGGACAGCATCTACTGGGACCGCGCCATGGCCGCCTCGGTGCTGATGAT
GATCCCGGTCCTCATTCTCTATCTGGCTTTCCAGCGCTGGTTCGTCAGTTCATTCGTCGGCTCCGCCGTGAAAGGTTGA

Upstream 100 bases:

>100_bases
GGCTACGCATCGGCCGTTTCCGTCATCCTCTTCGTCATCGTTCTTCTGATCGCGCTCCTGCAACGCAAACTCCTGAGGCG
CTTCGATGTCTGATCTCGCT

Downstream 100 bases:

>100_bases
TCATGTCTCTGCAGGCAAAATCCGAAACGTCAGCACCTGAAACCATTGAAGCGGAGCTGCCTGAAGGCACGGTGCTGCAT
CTCTGGCTGAAGGCGCGCCA

Product: putative transmembrane transporter permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MTQPVPLAIARGNGKRSLRIVQSLCILVIALVMISPLFMLLIASLKDDRFRILADMGSFRAFWVSDPTLSNYKEIAHFSG
ELAYGRYLFNSLVILGATVVSGLVVNSMAGFVLAWGSLRGKAALLALVVALYVIPQESIIMPLVVMMSRAGLTDTFAVQI
LPWVASPLYVFLFYQFFAQLPKELYEAAEMDGASAFRIYRSIYMPLSLPALATVSILMGIESWNQYLWPTLVTQTDYARP
IAVAIATFFGQDSIYWDRAMAASVLMMIPVLILYLAFQRWFVSSFVGSAVKG

Sequences:

>Translated_292_residues
MTQPVPLAIARGNGKRSLRIVQSLCILVIALVMISPLFMLLIASLKDDRFRILADMGSFRAFWVSDPTLSNYKEIAHFSG
ELAYGRYLFNSLVILGATVVSGLVVNSMAGFVLAWGSLRGKAALLALVVALYVIPQESIIMPLVVMMSRAGLTDTFAVQI
LPWVASPLYVFLFYQFFAQLPKELYEAAEMDGASAFRIYRSIYMPLSLPALATVSILMGIESWNQYLWPTLVTQTDYARP
IAVAIATFFGQDSIYWDRAMAASVLMMIPVLILYLAFQRWFVSSFVGSAVKG
>Mature_291_residues
TQPVPLAIARGNGKRSLRIVQSLCILVIALVMISPLFMLLIASLKDDRFRILADMGSFRAFWVSDPTLSNYKEIAHFSGE
LAYGRYLFNSLVILGATVVSGLVVNSMAGFVLAWGSLRGKAALLALVVALYVIPQESIIMPLVVMMSRAGLTDTFAVQIL
PWVASPLYVFLFYQFFAQLPKELYEAAEMDGASAFRIYRSIYMPLSLPALATVSILMGIESWNQYLWPTLVTQTDYARPI
AVAIATFFGQDSIYWDRAMAASVLMMIPVLILYLAFQRWFVSSFVGSAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=209, Percent_Identity=34.4497607655502, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1787571, Length=283, Percent_Identity=25.7950530035336, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790464, Length=295, Percent_Identity=26.4406779661017, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32373; Mature: 32242

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPVPLAIARGNGKRSLRIVQSLCILVIALVMISPLFMLLIASLKDDRFRILADMGSFR
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCE
AFWVSDPTLSNYKEIAHFSGELAYGRYLFNSLVILGATVVSGLVVNSMAGFVLAWGSLRG
EEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
KAALLALVVALYVIPQESIIMPLVVMMSRAGLTDTFAVQILPWVASPLYVFLFYQFFAQL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKELYEAAEMDGASAFRIYRSIYMPLSLPALATVSILMGIESWNQYLWPTLVTQTDYARP
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
IAVAIATFFGQDSIYWDRAMAASVLMMIPVLILYLAFQRWFVSSFVGSAVKG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQPVPLAIARGNGKRSLRIVQSLCILVIALVMISPLFMLLIASLKDDRFRILADMGSFR
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCE
AFWVSDPTLSNYKEIAHFSGELAYGRYLFNSLVILGATVVSGLVVNSMAGFVLAWGSLRG
EEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
KAALLALVVALYVIPQESIIMPLVVMMSRAGLTDTFAVQILPWVASPLYVFLFYQFFAQL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKELYEAAEMDGASAFRIYRSIYMPLSLPALATVSILMGIESWNQYLWPTLVTQTDYARP
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
IAVAIATFFGQDSIYWDRAMAASVLMMIPVLILYLAFQRWFVSSFVGSAVKG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]