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The map label for this gene is ycaC [H]

Identifier: 116249120

GI number: 116249120

Start: 490583

End: 491272

Strand: Reverse

Name: ycaC [H]

Synonym: pRL120455

Alternate gene names: 116249120

Gene position: 491272-490583 (Counterclockwise)

Preceding gene: 116249121

Following gene: 116249119

Centisome position: 56.47

GC content: 61.88

Gene sequence:

>690_bases
ATGTCCAGCAAGCTTCAGGTCCTCACCCCGCAGAACAGCCAGATCATCTTCATCGACCAGCAGCCGCAGATGGCCTTCGG
CGTTCAGTCGATCGACCGCCAGGTCTTGAAGAACAACGTCGTCGGTCTTGCCAAGGCAGCGAAGATCTTCAACATCCCGA
CCACCATCACCACCGTCGAAACCGACAGCTTCTCGGGCAACACCTTCCCGGAACTGCTCGCCGTCGTCCCCGACAATGAT
ATCCTCGAACGCACCTCGATGAACTCCTGGGACGACCAGAACGTCCGCGACGCGCTTGCCAAGCATGCAGCAGACGGCCG
CAAGAAGGTCGTCGTCGCCGGCCTGTGGACCGAGGTTTGCAACACGACCTTCGCGCTCTCCTGCATGAACGACACCGACT
ATGAAATCTACATGGTCGCCGATGCCTCCGGCGGCACCTCCGTCGATGCGCACAAATATGCGATGGACCGCATGGTGCAG
GCCGGCGTCGTTCCGGTCACCTGGCAGCAGGTCCTTTTGGAATGGCAGCGCGACTGGGCCCGTAAGGAAACCTACGACGC
GGTGACGTCGCTGGTGAAGGAGCATTCCGGCGCCTACGGCATGGGCATCGACTATGCCGTCACCCACGTCCACGGCGGCG
CCGAGCGGGTCAGCCATGGCAAGCGGATCGGCCCGAACCCCGCGAAGTAA

Upstream 100 bases:

>100_bases
CCTGAGGTCGCTTTCCAACAATACGGCGGCATAACTTTCAAGACGTGCCGCCTTGCCTGCCCCATTACCTACCTGCAACC
CAATCAAAGGAAGACACGAG

Downstream 100 bases:

>100_bases
AACCGTCATCACTCCGGCAGGCCGCCGCCTGCCGGAGTGAACTCTTTCTCCCCAAGCGAAGGTGATCCGCGATGAAAATC
TATCTCTTGTCCCTCGGTGC

Product: putative isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSSKLQVLTPQNSQIIFIDQQPQMAFGVQSIDRQVLKNNVVGLAKAAKIFNIPTTITTVETDSFSGNTFPELLAVVPDND
ILERTSMNSWDDQNVRDALAKHAADGRKKVVVAGLWTEVCNTTFALSCMNDTDYEIYMVADASGGTSVDAHKYAMDRMVQ
AGVVPVTWQQVLLEWQRDWARKETYDAVTSLVKEHSGAYGMGIDYAVTHVHGGAERVSHGKRIGPNPAK

Sequences:

>Translated_229_residues
MSSKLQVLTPQNSQIIFIDQQPQMAFGVQSIDRQVLKNNVVGLAKAAKIFNIPTTITTVETDSFSGNTFPELLAVVPDND
ILERTSMNSWDDQNVRDALAKHAADGRKKVVVAGLWTEVCNTTFALSCMNDTDYEIYMVADASGGTSVDAHKYAMDRMVQ
AGVVPVTWQQVLLEWQRDWARKETYDAVTSLVKEHSGAYGMGIDYAVTHVHGGAERVSHGKRIGPNPAK
>Mature_228_residues
SSKLQVLTPQNSQIIFIDQQPQMAFGVQSIDRQVLKNNVVGLAKAAKIFNIPTTITTVETDSFSGNTFPELLAVVPDNDI
LERTSMNSWDDQNVRDALAKHAADGRKKVVVAGLWTEVCNTTFALSCMNDTDYEIYMVADASGGTSVDAHKYAMDRMVQA
GVVPVTWQQVLLEWQRDWARKETYDAVTSLVKEHSGAYGMGIDYAVTHVHGGAERVSHGKRIGPNPAK

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=200, Percent_Identity=32, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 25202; Mature: 25071

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKLQVLTPQNSQIIFIDQQPQMAFGVQSIDRQVLKNNVVGLAKAAKIFNIPTTITTVE
CCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHEEECCCEEEEEE
TDSFSGNTFPELLAVVPDNDILERTSMNSWDDQNVRDALAKHAADGRKKVVVAGLWTEVC
CCCCCCCCHHHHEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHC
NTTFALSCMNDTDYEIYMVADASGGTSVDAHKYAMDRMVQAGVVPVTWQQVLLEWQRDWA
CCEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RKETYDAVTSLVKEHSGAYGMGIDYAVTHVHGGAERVSHGKRIGPNPAK
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SSKLQVLTPQNSQIIFIDQQPQMAFGVQSIDRQVLKNNVVGLAKAAKIFNIPTTITTVE
CCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHEEECCCEEEEEE
TDSFSGNTFPELLAVVPDNDILERTSMNSWDDQNVRDALAKHAADGRKKVVVAGLWTEVC
CCCCCCCCHHHHEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHC
NTTFALSCMNDTDYEIYMVADASGGTSVDAHKYAMDRMVQAGVVPVTWQQVLLEWQRDWA
CCEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RKETYDAVTSLVKEHSGAYGMGIDYAVTHVHGGAERVSHGKRIGPNPAK
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]