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The map label for this gene is rhaR [C]

Identifier: 116249114

GI number: 116249114

Start: 483915

End: 484835

Strand: Direct

Name: rhaR [C]

Synonym: pRL120449

Alternate gene names: 116249114

Gene position: 483915-484835 (Clockwise)

Preceding gene: 116249102

Following gene: 116249122

Centisome position: 55.62

GC content: 55.7

Gene sequence:

>921_bases
ATGATCGAGACACATATGAGTGAGGCGTTGACAATCAGTGAGAGAATTGCGGCGTGTTTTGGGATTAATGCCGCAAGGGC
GCTGGCAATCAGGCCTCTTTACAAGGCAAAGCTCGCTGTCGTCCATCTCGAGCACTCCTATGACAGTAGCGAACACACAA
TCGTCCTGCCGGCTGATGACGCCTTTCTGGTCATGCTCTATCTCGTTGACGTTGATCATTGCGACGTCCTGCCGGACGGA
GCACGGACACCTCGGAAGACCTATTCCAGAGGTTCTATGTGTCTCATCAGTTTGAGGAATGGGGCCGCAATTTCTGTTCG
TGGCCGCTTCGAAGCACTGGCGTTTCATATCCCAAGCGCGCTTTTTGTCGAGCTCGCGGAGGAAGCGGGCGAGCCGCGTA
TTGATGACCTCACAACCTGCCGCGGGATTGACGATCAGGTGGTCCGCAATATCGGCGCTGCACTGATACCGATGTTCGAC
ATGCCGGACGAGGTCAGGGATACACTGCTTCCTCATATCGGATTAGCGCTAAGCGCCCATCTTGCGCATCGTTACGGGCG
GTCCCCCATCCAGCACCTGTCGGGCACCGGTCGGCTGTCTCCGCTGCAGGAAAAGCGCATCAAGGCGTACATAGCTGCGA
ACTTATCGGGCGGCACACCGGTCGATAAGATTGCCGAAGCCTGCGGATTTTCAGTCGATGAGCTCTGTTCCGGATTCTTG
AACACGACCGGGCAGTCTGTTTCGGAATGGATTTCGTCATATCGAATAAGCAGAGCCCAGTCGCAACTGAGCAGAACAGG
TGAAACCATTGCCCGGATCGCTGAAGAGTGCGGGTTTCCGGACGAAAATGAACTCGTTGCAACATTCACGAGGGTCGTGG
GGGTGCATCCTGCGGCTTGGCGCTCGAGCAACCGACACTAA

Upstream 100 bases:

>100_bases
CCCGCGAGGATCCTTTTGTTCAAGATTGCCGTTTGAAACCTGTGTAGGAAACTTTGACGCGCGGCATCTCGTCGGTACGG
CTATACAGTCCCCAGCCAGG

Downstream 100 bases:

>100_bases
CAGAAAACCATCGAGCAGCACTGCTGGGCTTTGAGCTCAGCTTCGCTCAGGACTGTCCTGGTGACAGCCTGCTTGGTCGG
GTTTGTTCGGCCGGATCCGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; AraC Family Transcription Regulator Protein; AraC Family Regulatory Protein; Helix-Turn-Helix-Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIETHMSEALTISERIAACFGINAARALAIRPLYKAKLAVVHLEHSYDSSEHTIVLPADDAFLVMLYLVDVDHCDVLPDG
ARTPRKTYSRGSMCLISLRNGAAISVRGRFEALAFHIPSALFVELAEEAGEPRIDDLTTCRGIDDQVVRNIGAALIPMFD
MPDEVRDTLLPHIGLALSAHLAHRYGRSPIQHLSGTGRLSPLQEKRIKAYIAANLSGGTPVDKIAEACGFSVDELCSGFL
NTTGQSVSEWISSYRISRAQSQLSRTGETIARIAEECGFPDENELVATFTRVVGVHPAAWRSSNRH

Sequences:

>Translated_306_residues
MIETHMSEALTISERIAACFGINAARALAIRPLYKAKLAVVHLEHSYDSSEHTIVLPADDAFLVMLYLVDVDHCDVLPDG
ARTPRKTYSRGSMCLISLRNGAAISVRGRFEALAFHIPSALFVELAEEAGEPRIDDLTTCRGIDDQVVRNIGAALIPMFD
MPDEVRDTLLPHIGLALSAHLAHRYGRSPIQHLSGTGRLSPLQEKRIKAYIAANLSGGTPVDKIAEACGFSVDELCSGFL
NTTGQSVSEWISSYRISRAQSQLSRTGETIARIAEECGFPDENELVATFTRVVGVHPAAWRSSNRH
>Mature_306_residues
MIETHMSEALTISERIAACFGINAARALAIRPLYKAKLAVVHLEHSYDSSEHTIVLPADDAFLVMLYLVDVDHCDVLPDG
ARTPRKTYSRGSMCLISLRNGAAISVRGRFEALAFHIPSALFVELAEEAGEPRIDDLTTCRGIDDQVVRNIGAALIPMFD
MPDEVRDTLLPHIGLALSAHLAHRYGRSPIQHLSGTGRLSPLQEKRIKAYIAANLSGGTPVDKIAEACGFSVDELCSGFL
NTTGQSVSEWISSYRISRAQSQLSRTGETIARIAEECGFPDENELVATFTRVVGVHPAAWRSSNRH

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33421; Mature: 33421

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIETHMSEALTISERIAACFGINAARALAIRPLYKAKLAVVHLEHSYDSSEHTIVLPADD
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEECCCCCCCCEEEEECCH
AFLVMLYLVDVDHCDVLPDGARTPRKTYSRGSMCLISLRNGAAISVRGRFEALAFHIPSA
HHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCEEEECCHHHHHHHHCCHH
LFVELAEEAGEPRIDDLTTCRGIDDQVVRNIGAALIPMFDMPDEVRDTLLPHIGLALSAH
HHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LAHRYGRSPIQHLSGTGRLSPLQEKRIKAYIAANLSGGTPVDKIAEACGFSVDELCSGFL
HHHHHCCCHHHHCCCCCCCCHHHHHHHHHHEEEECCCCCCHHHHHHHHCCCHHHHHHHHH
NTTGQSVSEWISSYRISRAQSQLSRTGETIARIAEECGFPDENELVATFTRVVGVHPAAW
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
RSSNRH
CCCCCC
>Mature Secondary Structure
MIETHMSEALTISERIAACFGINAARALAIRPLYKAKLAVVHLEHSYDSSEHTIVLPADD
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEECCCCCCCCEEEEECCH
AFLVMLYLVDVDHCDVLPDGARTPRKTYSRGSMCLISLRNGAAISVRGRFEALAFHIPSA
HHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCCEEEECCHHHHHHHHCCHH
LFVELAEEAGEPRIDDLTTCRGIDDQVVRNIGAALIPMFDMPDEVRDTLLPHIGLALSAH
HHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
LAHRYGRSPIQHLSGTGRLSPLQEKRIKAYIAANLSGGTPVDKIAEACGFSVDELCSGFL
HHHHHCCCHHHHCCCCCCCCHHHHHHHHHHEEEECCCCCCHHHHHHHHCCCHHHHHHHHH
NTTGQSVSEWISSYRISRAQSQLSRTGETIARIAEECGFPDENELVATFTRVVGVHPAAW
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
RSSNRH
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA