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The map label for this gene is ycdC [C]

Identifier: 116249014

GI number: 116249014

Start: 371287

End: 371925

Strand: Direct

Name: ycdC [C]

Synonym: pRL120345

Alternate gene names: 116249014

Gene position: 371287-371925 (Clockwise)

Preceding gene: 116249012

Following gene: 116249016

Centisome position: 42.68

GC content: 62.44

Gene sequence:

>639_bases
ATGGCAGAATTTTTCGAATCGAAGACCGGACTGGAGGAAAAGCGACGGCGCCGATCCCGCAAGGGCGAAGCGCGCCGCGC
GGAGATCCTGTCGGCTGCGATGCGACGCTTTGCCGAAGACGGCTACCAGAATGCTGCGATCGGCGATATCGCCCGCGACG
TCGGCCTGTCGCTGCCCGGCCTGCTGCACCATTTTCCGACCAAGGTCGATCTCCTGCTTGCCATTCTGGACAAGCGCGAT
CTCGAAAGCGAAAGCTTCATCGGGCCCTATCGCTCCGATCTCCGCGGCTTGCTCAAGGGCATGGTCGAAGTCTTCCGCCG
CAACGCCGATATGGTCGAGGTCGTCAGGACCTTCGCCATCCTGAATGCCGAGAGCCTGATGAAGGATCACCCGGCCAAGG
CATGGTTTCTCGATCGCGCCACCCAGCTGCAGAATGACATCGCCGCGACTTTCGAACAGGCCGTCGCCGATGGCTCGATA
GACGGCAAGATCGATGGCCGGGCGATGGCAGCCGAGCTGATCGCCGTGATGGACGGCCTTCAGATGCTCTGGCTGCGCGA
TCCCACCCGCTTCGACATGGTCGGCGGGTTGGAAGCCTATGTCAGCCGCCTGCTGGCGAGCCTTGGCCTGGAGGATTGA

Upstream 100 bases:

>100_bases
AGGTAGTTCTTAAACCTACCGATTACTCGGTATTTTTAAGATGTCAACTACGCGCCCGTGATGTATGGATGGAGGGCGTG
AGAAAGAGGCAGACGAGACG

Downstream 100 bases:

>100_bases
GCTTGGCTTGCGGCTCTGTGCTCGGGGGCCGATCGAGGTGGCGCTCTATCGGAAGATCTAGCATCCATCAAAGCGTGCCA
ACCAGACCATAATGCGGCTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator TetR Family Protein; Regulator; Transcriptional Regulator Protein; Regulatory Protein TetR

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MAEFFESKTGLEEKRRRRSRKGEARRAEILSAAMRRFAEDGYQNAAIGDIARDVGLSLPGLLHHFPTKVDLLLAILDKRD
LESESFIGPYRSDLRGLLKGMVEVFRRNADMVEVVRTFAILNAESLMKDHPAKAWFLDRATQLQNDIAATFEQAVADGSI
DGKIDGRAMAAELIAVMDGLQMLWLRDPTRFDMVGGLEAYVSRLLASLGLED

Sequences:

>Translated_212_residues
MAEFFESKTGLEEKRRRRSRKGEARRAEILSAAMRRFAEDGYQNAAIGDIARDVGLSLPGLLHHFPTKVDLLLAILDKRD
LESESFIGPYRSDLRGLLKGMVEVFRRNADMVEVVRTFAILNAESLMKDHPAKAWFLDRATQLQNDIAATFEQAVADGSI
DGKIDGRAMAAELIAVMDGLQMLWLRDPTRFDMVGGLEAYVSRLLASLGLED
>Mature_211_residues
AEFFESKTGLEEKRRRRSRKGEARRAEILSAAMRRFAEDGYQNAAIGDIARDVGLSLPGLLHHFPTKVDLLLAILDKRDL
ESESFIGPYRSDLRGLLKGMVEVFRRNADMVEVVRTFAILNAESLMKDHPAKAWFLDRATQLQNDIAATFEQAVADGSID
GKIDGRAMAAELIAVMDGLQMLWLRDPTRFDMVGGLEAYVSRLLASLGLED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23701; Mature: 23569

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEFFESKTGLEEKRRRRSRKGEARRAEILSAAMRRFAEDGYQNAAIGDIARDVGLSLPG
CCHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
LLHHFPTKVDLLLAILDKRDLESESFIGPYRSDLRGLLKGMVEVFRRNADMVEVVRTFAI
HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LNAESLMKDHPAKAWFLDRATQLQNDIAATFEQAVADGSIDGKIDGRAMAAELIAVMDGL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
QMLWLRDPTRFDMVGGLEAYVSRLLASLGLED
HHHHHCCCCHHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AEFFESKTGLEEKRRRRSRKGEARRAEILSAAMRRFAEDGYQNAAIGDIARDVGLSLPG
CHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHH
LLHHFPTKVDLLLAILDKRDLESESFIGPYRSDLRGLLKGMVEVFRRNADMVEVVRTFAI
HHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LNAESLMKDHPAKAWFLDRATQLQNDIAATFEQAVADGSIDGKIDGRAMAAELIAVMDGL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
QMLWLRDPTRFDMVGGLEAYVSRLLASLGLED
HHHHHCCCCHHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA