| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is oppD [C]
Identifier: 116248998
GI number: 116248998
Start: 353499
End: 354515
Strand: Direct
Name: oppD [C]
Synonym: pRL120329
Alternate gene names: 116248998
Gene position: 353499-354515 (Clockwise)
Preceding gene: 116248997
Following gene: 116248999
Centisome position: 40.63
GC content: 65.09
Gene sequence:
>1017_bases ATGGAACAGATCGCCGAACCCGTGCTCGACATCAAGGGATTGCGAACGGTCTTCCGCATCCGCGGCGGTGAGATCACGGC GGTCAACAATATCGACCTAACCGTTGCCGCCGGCGAGACGCTTGCGCTCGTCGGCGAATCCGGCTCCGGCAAGTCGGTCA CCAGCCTGTCGGTCATGCGGCTGCTCACCCGCAACATCGGCGTGATCGCCGCAGGCAGCATCCGCCTTGCGACGAGCGAT GGCGTGGTCCGCGATCTCGTCTCCCTCGACGAAGAGAGCATGCGCAGGATCAGGGGCGACGACATCGGCATGATATTCCA GGAGCCGATGTCGAGCCTCAATCCTGTCTTCACCATTGGCGACCAGATCGCCGAGCCGATCCGCATCCATCGCGGCGCGG ACCGCAAGGCGGCAATGAACGCAGCCGTCGCGCTGCTTGAAAGCGTCGGCATACCGGACGCCCGACGCCGCGCCGGCCAA TATCCGCACGAACTGTCAGGCGGCATGCGGCAGCGCGCGACGATCGCCATGGCGCTCGCCTGCGATCCGGCGCTGCTGAT CGCCGACGAGCCGACCACGGCGCTCGACGTGACGATCCAGGCGCAGATTCTCGACCTGCTCCTCAAATTGCAGCGCGAGC GCGGCATGGCCATGCTCTTCGTCACCCACAATCTCGGCGTCGTCGCCGAAATCGCCCATCGCGTGGCGGTGATGTATGCC GGCCGGATCGTCGAAGAAGGGCCGGTCGGCGAGGTTTTCCGCAATCCCAAGCACCCCTACACGATGGGCCTTCTCGCCTC CATGCCGCGCCTTGGCGATGCCGCGCGGATGAAGCTGGCCGGCGAAAAGCTCGCGGCCATTCCCGGCATGGTTCCGAGCC TGATGAACATGCCGAGCGGCTGCGCCTTTTCCCCGCGCTGCAAATTCGCGATCGAAGCCTGTCGCGCTGCCGTTCCCGCG CTCGAACAGGTCAATCCGCAGCATCTCAGCCGCTGCATCAGATGGCAGGAGATCTAG
Upstream 100 bases:
>100_bases CCGCCGTCATGCCGCGGCCGCGTGCCGCCCTCAACGATGCCGAAACGGCGCGGATCGACGAGATCCTGCGTGCAACCGGC CTGCTGAACTGAGCCGGCTA
Downstream 100 bases:
>100_bases ATGAGCGCACCGCTGCTTTCCGTCCGCGACCTTTCGAAACATTATACTTCCCGCGGCACGCGGCTGAACATTCTCCAGGG CATCTCCTTCGATATCGGCA
Product: putative ATP-binding component of ABC transporter
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MEQIAEPVLDIKGLRTVFRIRGGEITAVNNIDLTVAAGETLALVGESGSGKSVTSLSVMRLLTRNIGVIAAGSIRLATSD GVVRDLVSLDEESMRRIRGDDIGMIFQEPMSSLNPVFTIGDQIAEPIRIHRGADRKAAMNAAVALLESVGIPDARRRAGQ YPHELSGGMRQRATIAMALACDPALLIADEPTTALDVTIQAQILDLLLKLQRERGMAMLFVTHNLGVVAEIAHRVAVMYA GRIVEEGPVGEVFRNPKHPYTMGLLASMPRLGDAARMKLAGEKLAAIPGMVPSLMNMPSGCAFSPRCKFAIEACRAAVPA LEQVNPQHLSRCIRWQEI
Sequences:
>Translated_338_residues MEQIAEPVLDIKGLRTVFRIRGGEITAVNNIDLTVAAGETLALVGESGSGKSVTSLSVMRLLTRNIGVIAAGSIRLATSD GVVRDLVSLDEESMRRIRGDDIGMIFQEPMSSLNPVFTIGDQIAEPIRIHRGADRKAAMNAAVALLESVGIPDARRRAGQ YPHELSGGMRQRATIAMALACDPALLIADEPTTALDVTIQAQILDLLLKLQRERGMAMLFVTHNLGVVAEIAHRVAVMYA GRIVEEGPVGEVFRNPKHPYTMGLLASMPRLGDAARMKLAGEKLAAIPGMVPSLMNMPSGCAFSPRCKFAIEACRAAVPA LEQVNPQHLSRCIRWQEI >Mature_338_residues MEQIAEPVLDIKGLRTVFRIRGGEITAVNNIDLTVAAGETLALVGESGSGKSVTSLSVMRLLTRNIGVIAAGSIRLATSD GVVRDLVSLDEESMRRIRGDDIGMIFQEPMSSLNPVFTIGDQIAEPIRIHRGADRKAAMNAAVALLESVGIPDARRRAGQ YPHELSGGMRQRATIAMALACDPALLIADEPTTALDVTIQAQILDLLLKLQRERGMAMLFVTHNLGVVAEIAHRVAVMYA GRIVEEGPVGEVFRNPKHPYTMGLLASMPRLGDAARMKLAGEKLAAIPGMVPSLMNMPSGCAFSPRCKFAIEACRAAVPA LEQVNPQHLSRCIRWQEI
Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI4505771, Length=235, Percent_Identity=31.063829787234, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI9961250, Length=235, Percent_Identity=31.063829787234, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI9961252, Length=235, Percent_Identity=31.063829787234, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI9955963, Length=226, Percent_Identity=32.3008849557522, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI156105685, Length=233, Percent_Identity=31.3304721030043, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI171184400, Length=271, Percent_Identity=30.9963099630996, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI105990541, Length=241, Percent_Identity=26.5560165975104, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI42490749, Length=245, Percent_Identity=31.0204081632653, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI42741659, Length=265, Percent_Identity=28.6792452830189, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI148612844, Length=244, Percent_Identity=31.5573770491803, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI255708477, Length=244, Percent_Identity=31.5573770491803, Blast_Score=68, Evalue=1e-11, Organism=Escherichia coli, GI48994883, Length=336, Percent_Identity=47.6190476190476, Blast_Score=308, Evalue=3e-85, Organism=Escherichia coli, GI1789963, Length=325, Percent_Identity=45.2307692307692, Blast_Score=291, Evalue=6e-80, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=54.7169811320755, Blast_Score=285, Evalue=4e-78, Organism=Escherichia coli, GI1787759, Length=332, Percent_Identity=44.8795180722892, Blast_Score=275, Evalue=3e-75, Organism=Escherichia coli, GI1788506, Length=266, Percent_Identity=50.7518796992481, Blast_Score=250, Evalue=9e-68, Organism=Escherichia coli, GI1787500, Length=326, Percent_Identity=39.8773006134969, Blast_Score=217, Evalue=1e-57, Organism=Escherichia coli, GI1789962, Length=333, Percent_Identity=36.036036036036, Blast_Score=207, Evalue=5e-55, Organism=Escherichia coli, GI1787548, Length=313, Percent_Identity=35.7827476038339, Blast_Score=197, Evalue=1e-51, Organism=Escherichia coli, GI1787758, Length=293, Percent_Identity=37.542662116041, Blast_Score=180, Evalue=1e-46, Organism=Escherichia coli, GI1789890, Length=260, Percent_Identity=40.3846153846154, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1787547, Length=268, Percent_Identity=31.7164179104478, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI48994997, Length=266, Percent_Identity=34.5864661654135, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1789891, Length=224, Percent_Identity=37.0535714285714, Blast_Score=128, Evalue=5e-31, Organism=Escherichia coli, GI1787029, Length=235, Percent_Identity=35.7446808510638, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1786398, Length=264, Percent_Identity=34.0909090909091, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1789672, Length=247, Percent_Identity=34.8178137651822, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1788225, Length=243, Percent_Identity=33.7448559670782, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1789032, Length=236, Percent_Identity=35.1694915254237, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1786703, Length=242, Percent_Identity=34.297520661157, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1787370, Length=264, Percent_Identity=29.1666666666667, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1786872, Length=225, Percent_Identity=34.2222222222222, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787105, Length=247, Percent_Identity=33.1983805668016, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787089, Length=246, Percent_Identity=36.1788617886179, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI87081834, Length=227, Percent_Identity=34.3612334801762, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788761, Length=271, Percent_Identity=29.8892988929889, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=29.3877551020408, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1788644, Length=245, Percent_Identity=34.6938775510204, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI87081791, Length=266, Percent_Identity=31.5789473684211, Blast_Score=95, Evalue=6e-21, Organism=Escherichia coli, GI87081709, Length=246, Percent_Identity=28.8617886178862, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1786563, Length=229, Percent_Identity=32.7510917030568, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790162, Length=242, Percent_Identity=29.7520661157025, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=30.5309734513274, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787164, Length=224, Percent_Identity=31.6964285714286, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786803, Length=248, Percent_Identity=31.0483870967742, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1790467, Length=248, Percent_Identity=25.4032258064516, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI87082267, Length=256, Percent_Identity=29.296875, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI1789873, Length=225, Percent_Identity=31.5555555555556, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786319, Length=223, Percent_Identity=28.2511210762332, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1786345, Length=250, Percent_Identity=28.8, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI48995001, Length=246, Percent_Identity=29.6747967479675, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790534, Length=219, Percent_Identity=30.5936073059361, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=31.6964285714286, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790739, Length=234, Percent_Identity=29.4871794871795, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI48994943, Length=250, Percent_Identity=30.4, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787112, Length=238, Percent_Identity=28.9915966386555, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1790525, Length=255, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789593, Length=228, Percent_Identity=26.7543859649123, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789586, Length=256, Percent_Identity=28.90625, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1789991, Length=248, Percent_Identity=28.2258064516129, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1786654, Length=262, Percent_Identity=26.7175572519084, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1790190, Length=225, Percent_Identity=26.6666666666667, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1787792, Length=219, Percent_Identity=27.8538812785388, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI193209708, Length=229, Percent_Identity=31.4410480349345, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17569143, Length=222, Percent_Identity=31.5315315315315, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193202349, Length=249, Percent_Identity=28.9156626506024, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI212646699, Length=229, Percent_Identity=30.5676855895196, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI25146777, Length=227, Percent_Identity=27.7533039647577, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71984940, Length=248, Percent_Identity=29.8387096774194, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71996809, Length=223, Percent_Identity=32.7354260089686, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193211015, Length=223, Percent_Identity=32.7354260089686, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193211017, Length=223, Percent_Identity=32.7354260089686, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17543740, Length=241, Percent_Identity=29.045643153527, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17565938, Length=239, Percent_Identity=30.1255230125523, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI115533592, Length=227, Percent_Identity=30.8370044052863, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115534520, Length=236, Percent_Identity=28.3898305084746, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17569145, Length=242, Percent_Identity=28.5123966942149, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71992290, Length=236, Percent_Identity=29.6610169491525, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567265, Length=225, Percent_Identity=29.7777777777778, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17541710, Length=236, Percent_Identity=31.3559322033898, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17558664, Length=233, Percent_Identity=30.4721030042918, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=235, Percent_Identity=28.936170212766, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6319856, Length=242, Percent_Identity=26.0330578512397, Blast_Score=64, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=211, Percent_Identity=26.0663507109005, Blast_Score=62, Evalue=9e-11, Organism=Drosophila melanogaster, GI24641565, Length=230, Percent_Identity=32.6086956521739, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI28574150, Length=236, Percent_Identity=26.6949152542373, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI116007328, Length=236, Percent_Identity=26.6949152542373, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI23397593, Length=236, Percent_Identity=30.9322033898305, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI85726357, Length=244, Percent_Identity=30.7377049180328, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI17136662, Length=232, Percent_Identity=30.1724137931034, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24659289, Length=240, Percent_Identity=28.3333333333333, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI21357907, Length=228, Percent_Identity=31.140350877193, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI28574533, Length=251, Percent_Identity=28.2868525896414, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI281363262, Length=229, Percent_Identity=30.5676855895196, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 36403; Mature: 36403
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQIAEPVLDIKGLRTVFRIRGGEITAVNNIDLTVAAGETLALVGESGSGKSVTSLSVMR CCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCEEEEEECCCCCCCHHHHHHHH LLTRNIGVIAAGSIRLATSDGVVRDLVSLDEESMRRIRGDDIGMIFQEPMSSLNPVFTIG HHHHCCCEEEECCEEEECCCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCEEEEC DQIAEPIRIHRGADRKAAMNAAVALLESVGIPDARRRAGQYPHELSGGMRQRATIAMALA HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHCCHHHHHHEEEEEE CDPALLIADEPTTALDVTIQAQILDLLLKLQRERGMAMLFVTHNLGVVAEIAHRVAVMYA CCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH GRIVEEGPVGEVFRNPKHPYTMGLLASMPRLGDAARMKLAGEKLAAIPGMVPSLMNMPSG HHHCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCHHHHHCCCHHHHHHCCCCC CAFSPRCKFAIEACRAAVPALEQVNPQHLSRCIRWQEI CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC >Mature Secondary Structure MEQIAEPVLDIKGLRTVFRIRGGEITAVNNIDLTVAAGETLALVGESGSGKSVTSLSVMR CCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCEEEEEECCCCCCCHHHHHHHH LLTRNIGVIAAGSIRLATSDGVVRDLVSLDEESMRRIRGDDIGMIFQEPMSSLNPVFTIG HHHHCCCEEEECCEEEECCCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCEEEEC DQIAEPIRIHRGADRKAAMNAAVALLESVGIPDARRRAGQYPHELSGGMRQRATIAMALA HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHCCHHHHHHEEEEEE CDPALLIADEPTTALDVTIQAQILDLLLKLQRERGMAMLFVTHNLGVVAEIAHRVAVMYA CCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHH GRIVEEGPVGEVFRNPKHPYTMGLLASMPRLGDAARMKLAGEKLAAIPGMVPSLMNMPSG HHHCCCCCCHHHHCCCCCCCHHHHHHCCCCCCCHHHHHHCCHHHHHCCCHHHHHHCCCCC CAFSPRCKFAIEACRAAVPALEQVNPQHLSRCIRWQEI CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA