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The map label for this gene is ydfI [H]

Identifier: 116248951

GI number: 116248951

Start: 299040

End: 299765

Strand: Reverse

Name: ydfI [H]

Synonym: pRL120282

Alternate gene names: 116248951

Gene position: 299765-299040 (Counterclockwise)

Preceding gene: 116248952

Following gene: 116248949

Centisome position: 34.45

GC content: 64.05

Gene sequence:

>726_bases
ATGATGAAGGTTCTGATCGTCGAGGACGACCCGCTGCACCGGTCCTATCTGCACGAGGCGGTCAACGCGGCTCTGCCGGA
ATGCGACACGGTGATCGAGGCGGAGAACGGAACCGTCGGCGAGAAGCTCGCCCGCGACCACAAGTCGGCGCATATCGTCA
TGGACCTGCAGATGGCGAACCGCAACGGCATCGAGGCCGCGCGCACCATCTGGAAGGAGCGGCCGGAGACCCGTATCCTG
TTCTGGTCGAATTATTCGGACGAGGCCTATGTGCGCGGCGTCTCCCGCATCGTGCCGGATGGCGCCGCCTATGGCTATGT
GCTGAAATCCGCCTCCGACGAGCGGCTGAAGCTTGCGCTGCGCTCGATCTTCATCGAGAGCCAGTGCGTCATCGACCGCG
AGGTGCGGGGCCTGCAGCAGAAAAGCCTCGGCCAGACGAACGGCTTCACCGATTCCGAATACGAGATCCTCGTCGATATC
GCGCTCGGCCTCACCGACCGGGCCATCGCCAAACGTCGGGGCCTTTCGCTGCGCAGCGTGCAGAACCGCCTGCAGCAGCT
CTACGACAAGCTCGACGTCTACCAGAGCGCCGGCGACGACCACGAGGACGGCCGCTTCAATCTGCGCGCCCGCGCCGTCA
CCGTCGCTTTCCTGCGCAAACTCCTGAACTACAGCGCTCTGGAGCGGGCTGAGGCAGAGCTGCAGGAATGGCTTGAGGGA
AAGTAG

Upstream 100 bases:

>100_bases
ACGACCGGCCCCGGCCACAACAATCGCGGCACTGTGGTGCGCGTCGTGCTACCGCTCGTACCGAACGACCCGCCGAGCGG
GCCAAACTGAGGAGAAGGGC

Downstream 100 bases:

>100_bases
TTTCCGGACTTGCTCGGACAAACTGGGGATCAGAGACACGGGCTGCGGCCCTGCTTTTCACGGCGTATGAGCCAGCGCAA
TCGCATCGGCGGCTTCCTCG

Product: putative two-component response regulator transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MMKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTVGEKLARDHKSAHIVMDLQMANRNGIEAARTIWKERPETRIL
FWSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLALRSIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDI
ALGLTDRAIAKRRGLSLRSVQNRLQQLYDKLDVYQSAGDDHEDGRFNLRARAVTVAFLRKLLNYSALERAEAELQEWLEG
K

Sequences:

>Translated_241_residues
MMKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTVGEKLARDHKSAHIVMDLQMANRNGIEAARTIWKERPETRIL
FWSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLALRSIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDI
ALGLTDRAIAKRRGLSLRSVQNRLQQLYDKLDVYQSAGDDHEDGRFNLRARAVTVAFLRKLLNYSALERAEAELQEWLEG
K
>Mature_241_residues
MMKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTVGEKLARDHKSAHIVMDLQMANRNGIEAARTIWKERPETRIL
FWSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLALRSIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDI
ALGLTDRAIAKRRGLSLRSVQNRLQQLYDKLDVYQSAGDDHEDGRFNLRARAVTVAFLRKLLNYSALERAEAELQEWLEG
K

Specific function: Member of the two-component regulatory system ydfH/ydfI. Regulates the transcription of ydfJ by binding to its promoter region [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27353; Mature: 27353

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTVGEKLARDHKSAHIVMDLQMAN
CEEEEEECCCCCHHHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHHCCCEEEEEEEEECC
RNGIEAARTIWKERPETRILFWSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLAL
CCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHH
RSIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDIALGLTDRAIAKRRGLSLRSV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHCCCHHHH
QNRLQQLYDKLDVYQSAGDDHEDGRFNLRARAVTVAFLRKLLNYSALERAEAELQEWLEG
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
K
C
>Mature Secondary Structure
MMKVLIVEDDPLHRSYLHEAVNAALPECDTVIEAENGTVGEKLARDHKSAHIVMDLQMAN
CEEEEEECCCCCHHHHHHHHHHHCCCCCHHEEECCCCCHHHHHHHHCCCEEEEEEEEECC
RNGIEAARTIWKERPETRILFWSNYSDEAYVRGVSRIVPDGAAYGYVLKSASDERLKLAL
CCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHH
RSIFIESQCVIDREVRGLQQKSLGQTNGFTDSEYEILVDIALGLTDRAIAKRRGLSLRSV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHCCCHHHH
QNRLQQLYDKLDVYQSAGDDHEDGRFNLRARAVTVAFLRKLLNYSALERAEAELQEWLEG
HHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]