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The map label for this gene is rbsC [H]

Identifier: 116248871

GI number: 116248871

Start: 209242

End: 210294

Strand: Reverse

Name: rbsC [H]

Synonym: pRL120201

Alternate gene names: 116248871

Gene position: 210294-209242 (Counterclockwise)

Preceding gene: 116248872

Following gene: 116248870

Centisome position: 24.17

GC content: 62.49

Gene sequence:

>1053_bases
ATGTCAGTCACGAACGTCACCGAAAAGAAATCAGTTTCCAGCGGGCCGAAGCGCAATACCAATATCGTGCGTCTCATCCT
GGAGGGCCGGGCCTTCTTCGCGCTGATCGTCATCATCGCGGTCTTCTCATTCCTGTCGCCCTATTACTTCACTCTGAACA
ACTTCCTGATCATGGCGTCGCACGTCGCGATCTTCGGCATTCTGGCGATCGGCATGCTGCTCGTCATCCTGAATGGCGGC
ATCGACCTTTCGGTCGGCTCGACGCTTGGGCTTGCAGGCTGCATTGCCGGTTTCCTGATGCAGGGCGTCACGCTCACCTA
TTTCGGCGTCATCCTCTATCCGCCGGTCTGGGCCGTCGTCGTCATCACATGTGCGCTCGGTGCGCTGGTCGGTGCAGTCA
ACGGCGTGCTGATCGCCTATCTCAAGGTGCCGGCCTTCGTCGCCTCGCTCGGCGTGCTCTACGTCGCCCGCGGTATCGCG
CTCTTGATGACCAACGGCCTGACCTACAACAATCTCGGCGGCCGTCCGGAACTCGGCAATACCGGCTTCGACTGGCTCGG
CTTCAACCGGCTCGCAGGCATTCCGATCGGGGTCATCGTGCTTGCGGTTCTCGCCATCATTTGCGGCATCGTGCTGAGCC
GCACCGCCTTCGGCCGCTGGCTCTACGCCTCTGGTGGTAACGAGCGGGCCGCCGACCTCTCCGGCGTCCCGGTCAAGCGC
GTGAAGATCATCGTCTATGTGCTTTCGGGCGTCTGTGCCGCAATCGCCGGCCTAGTCCTCTCCTCGCAGCTGACCTCGGC
CGGTCCGACGGCAGGCACAACCTACGAGCTGACGGCAATCGCAGCCGTGGTCATCGGCGGAGCGGCGCTGACCGGCGGCC
GCGGTACGGTTCGCGGCACCATGCTCGGCGCCTTCGTCATCGGCTTCCTTTCGGACGGCCTCGTGATCATCGGCGTCTCG
GCCTACTGGCAGACAGTATTCACCGGCGCTGTGATCGTTCTCGCCGTCCTCATGAACAGCATTCAATACGGCCGCCGGGT
CAAATCGTCCTGA

Upstream 100 bases:

>100_bases
GATATCGGCCGAGTTCGGCTCGGATGTCACCAAGGAAAAGATCATGGCCGCCTCCGGCGAAGCCGTGGTCGCGCACTAGC
CTGAGTATGGAGCACTGATT

Downstream 100 bases:

>100_bases
CGGCTGAGACCGAAACTTATCCACGACGGCAGGCTGGAGTCCAGAAAGCCGATTGGGGAAAGCAACGCCGGATCACCGGC
AATAACTGAGCTCACGAATG

Product: putative permease component of ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MSVTNVTEKKSVSSGPKRNTNIVRLILEGRAFFALIVIIAVFSFLSPYYFTLNNFLIMASHVAIFGILAIGMLLVILNGG
IDLSVGSTLGLAGCIAGFLMQGVTLTYFGVILYPPVWAVVVITCALGALVGAVNGVLIAYLKVPAFVASLGVLYVARGIA
LLMTNGLTYNNLGGRPELGNTGFDWLGFNRLAGIPIGVIVLAVLAIICGIVLSRTAFGRWLYASGGNERAADLSGVPVKR
VKIIVYVLSGVCAAIAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGTVRGTMLGAFVIGFLSDGLVIIGVS
AYWQTVFTGAVIVLAVLMNSIQYGRRVKSS

Sequences:

>Translated_350_residues
MSVTNVTEKKSVSSGPKRNTNIVRLILEGRAFFALIVIIAVFSFLSPYYFTLNNFLIMASHVAIFGILAIGMLLVILNGG
IDLSVGSTLGLAGCIAGFLMQGVTLTYFGVILYPPVWAVVVITCALGALVGAVNGVLIAYLKVPAFVASLGVLYVARGIA
LLMTNGLTYNNLGGRPELGNTGFDWLGFNRLAGIPIGVIVLAVLAIICGIVLSRTAFGRWLYASGGNERAADLSGVPVKR
VKIIVYVLSGVCAAIAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGTVRGTMLGAFVIGFLSDGLVIIGVS
AYWQTVFTGAVIVLAVLMNSIQYGRRVKSS
>Mature_349_residues
SVTNVTEKKSVSSGPKRNTNIVRLILEGRAFFALIVIIAVFSFLSPYYFTLNNFLIMASHVAIFGILAIGMLLVILNGGI
DLSVGSTLGLAGCIAGFLMQGVTLTYFGVILYPPVWAVVVITCALGALVGAVNGVLIAYLKVPAFVASLGVLYVARGIAL
LMTNGLTYNNLGGRPELGNTGFDWLGFNRLAGIPIGVIVLAVLAIICGIVLSRTAFGRWLYASGGNERAADLSGVPVKRV
KIIVYVLSGVCAAIAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGTVRGTMLGAFVIGFLSDGLVIIGVSA
YWQTVFTGAVIVLAVLMNSIQYGRRVKSS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=315, Percent_Identity=42.5396825396825, Blast_Score=214, Evalue=9e-57,
Organism=Escherichia coli, GI1788896, Length=320, Percent_Identity=38.75, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1789992, Length=367, Percent_Identity=35.4223433242507, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790524, Length=339, Percent_Identity=33.6283185840708, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI145693152, Length=342, Percent_Identity=31.2865497076023, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1788471, Length=326, Percent_Identity=35.2760736196319, Blast_Score=137, Evalue=8e-34,
Organism=Escherichia coli, GI1787794, Length=315, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI87082395, Length=264, Percent_Identity=37.8787878787879, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787793, Length=302, Percent_Identity=36.0927152317881, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693214, Length=268, Percent_Identity=36.9402985074627, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36259; Mature: 36128

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTNVTEKKSVSSGPKRNTNIVRLILEGRAFFALIVIIAVFSFLSPYYFTLNNFLIMAS
CCCCCCCHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
HVAIFGILAIGMLLVILNGGIDLSVGSTLGLAGCIAGFLMQGVTLTYFGVILYPPVWAVV
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VITCALGALVGAVNGVLIAYLKVPAFVASLGVLYVARGIALLMTNGLTYNNLGGRPELGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC
TGFDWLGFNRLAGIPIGVIVLAVLAIICGIVLSRTAFGRWLYASGGNERAADLSGVPVKR
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHH
VKIIVYVLSGVCAAIAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGTVRGT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHEECCCCCHHHH
MLGAFVIGFLSDGLVIIGVSAYWQTVFTGAVIVLAVLMNSIQYGRRVKSS
HHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SVTNVTEKKSVSSGPKRNTNIVRLILEGRAFFALIVIIAVFSFLSPYYFTLNNFLIMAS
CCCCCCHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
HVAIFGILAIGMLLVILNGGIDLSVGSTLGLAGCIAGFLMQGVTLTYFGVILYPPVWAVV
HHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VITCALGALVGAVNGVLIAYLKVPAFVASLGVLYVARGIALLMTNGLTYNNLGGRPELGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC
TGFDWLGFNRLAGIPIGVIVLAVLAIICGIVLSRTAFGRWLYASGGNERAADLSGVPVKR
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCHHH
VKIIVYVLSGVCAAIAGLVLSSQLTSAGPTAGTTYELTAIAAVVIGGAALTGGRGTVRGT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHEECCCCCHHHH
MLGAFVIGFLSDGLVIIGVSAYWQTVFTGAVIVLAVLMNSIQYGRRVKSS
HHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]