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The map label for this gene is potC [H]

Identifier: 116248819

GI number: 116248819

Start: 145742

End: 146587

Strand: Reverse

Name: potC [H]

Synonym: pRL120145

Alternate gene names: 116248819

Gene position: 146587-145742 (Counterclockwise)

Preceding gene: 116248820

Following gene: 116248818

Centisome position: 16.85

GC content: 63.59

Gene sequence:

>846_bases
ATGCAGGCAGGCGGCATCAAGCTTTCACTCGGCGTCTACACCGCGCTCTTCCTGATCTTCCTTTACGCACCGATGGTGGT
GCTCGCCATTCTGTCTTTCCAGACAGGGCCGGAAGGCGGACCGCAGTTCCCGATCATCGAATGGTCGACCTACTGGTACA
AGCATCTCTTCGGCCTGACGCCGCCGTCGCGCATCGCGCCGCTGCCGATCAACGAAGCCCTGGTCCGCTCGCTGGTGCTC
TCGGTGATGACGATGATCGTTTCCACCGTGCTCGGCGTCACCTCGGCGCAGGCCTTCCGTCGCCGGTTCCCTGGCTCGGG
CGTCGTCTTCTACCTGATCGTTCTCGGCATGATGGTCCCCGGCGTTCTCGTCGGCCTTGGCATGGCGCTCGTCGCCAATG
CGCTCGGCGTCGACCGGCACTGGTGGGGAACGGCCTTCGTGCTGCACGTGGTCTACACTTACCCCTTCGCCTTTCTCGTC
ATGCTGGCGATCCTCAACCGCTTCGACCAGAGCGTCGAGGAGGCGTCGTGGTCGCTCGGCGTGTCGCCGGCGCGCACCTT
CCGCAAGGTGACGTTCCCGCTGATCTTTCCGGGCGTGCTCTCGGCCATGCTCTTTGCCTTCACGCTGTCCTATGACGAAT
TCTCGCGCACGCTGTTTGCGTCCGGCCGCGACCTGACGCTGCCGCTCGCCATTTACGGCACCTTCTCGGTGGAGGTGCAT
CCAAACGTCTTCGCCTTTGGGGTGCTGACGACGATCTTCTCCTTCGCGCTGCTCGGCGTCTACGCCGTCCTGATGATGCT
TTCCATACGCCGCGCCAAGCGAGTCGCGATCCAGGAGGAGGCGTGA

Upstream 100 bases:

>100_bases
TGGGCCTTCGCCGCCGTCGTCGGCGTCGTGCTCACCGTGCTCATGGGCATTGTGGTCGCAGCACTCCTGCGCGTCGTCGA
TCTCAGGAAGGAGCTCTGAC

Downstream 100 bases:

>100_bases
TGCCGATACCTTCAGCCATCGTCACGGGTGCAGGATCCGGCATCGGCCGCGCGATCGCAGCCCGGCTGTCGCAGGACGGC
TATGCCGTGCTCGTCAATGA

Product: putative permease component of ABC transporter

Products: ADP; phosphate; putrescine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MQAGGIKLSLGVYTALFLIFLYAPMVVLAILSFQTGPEGGPQFPIIEWSTYWYKHLFGLTPPSRIAPLPINEALVRSLVL
SVMTMIVSTVLGVTSAQAFRRRFPGSGVVFYLIVLGMMVPGVLVGLGMALVANALGVDRHWWGTAFVLHVVYTYPFAFLV
MLAILNRFDQSVEEASWSLGVSPARTFRKVTFPLIFPGVLSAMLFAFTLSYDEFSRTLFASGRDLTLPLAIYGTFSVEVH
PNVFAFGVLTTIFSFALLGVYAVLMMLSIRRAKRVAIQEEA

Sequences:

>Translated_281_residues
MQAGGIKLSLGVYTALFLIFLYAPMVVLAILSFQTGPEGGPQFPIIEWSTYWYKHLFGLTPPSRIAPLPINEALVRSLVL
SVMTMIVSTVLGVTSAQAFRRRFPGSGVVFYLIVLGMMVPGVLVGLGMALVANALGVDRHWWGTAFVLHVVYTYPFAFLV
MLAILNRFDQSVEEASWSLGVSPARTFRKVTFPLIFPGVLSAMLFAFTLSYDEFSRTLFASGRDLTLPLAIYGTFSVEVH
PNVFAFGVLTTIFSFALLGVYAVLMMLSIRRAKRVAIQEEA
>Mature_281_residues
MQAGGIKLSLGVYTALFLIFLYAPMVVLAILSFQTGPEGGPQFPIIEWSTYWYKHLFGLTPPSRIAPLPINEALVRSLVL
SVMTMIVSTVLGVTSAQAFRRRFPGSGVVFYLIVLGMMVPGVLVGLGMALVANALGVDRHWWGTAFVLHVVYTYPFAFLV
MLAILNRFDQSVEEASWSLGVSPARTFRKVTFPLIFPGVLSAMLFAFTLSYDEFSRTLFASGRDLTLPLAIYGTFSVEVH
PNVFAFGVLTTIFSFALLGVYAVLMMLSIRRAKRVAIQEEA

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787081, Length=270, Percent_Identity=28.5185185185185, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787368, Length=222, Percent_Identity=27.9279279279279, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787714, Length=213, Percent_Identity=28.169014084507, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30939; Mature: 30939

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAGGIKLSLGVYTALFLIFLYAPMVVLAILSFQTGPEGGPQFPIIEWSTYWYKHLFGLT
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHCCC
PPSRIAPLPINEALVRSLVLSVMTMIVSTVLGVTSAQAFRRRFPGSGVVFYLIVLGMMVP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
GVLVGLGMALVANALGVDRHWWGTAFVLHVVYTYPFAFLVMLAILNRFDQSVEEASWSLG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSPARTFRKVTFPLIFPGVLSAMLFAFTLSYDEFSRTLFASGRDLTLPLAIYGTFSVEVH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEC
PNVFAFGVLTTIFSFALLGVYAVLMMLSIRRAKRVAIQEEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQAGGIKLSLGVYTALFLIFLYAPMVVLAILSFQTGPEGGPQFPIIEWSTYWYKHLFGLT
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHCCC
PPSRIAPLPINEALVRSLVLSVMTMIVSTVLGVTSAQAFRRRFPGSGVVFYLIVLGMMVP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
GVLVGLGMALVANALGVDRHWWGTAFVLHVVYTYPFAFLVMLAILNRFDQSVEEASWSLG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSPARTFRKVTFPLIFPGVLSAMLFAFTLSYDEFSRTLFASGRDLTLPLAIYGTFSVEVH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEC
PNVFAFGVLTTIFSFALLGVYAVLMMLSIRRAKRVAIQEEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; putrescine [Periplasm]; H2O [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]