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The map label for this gene is yjiA [H]

Identifier: 116248812

GI number: 116248812

Start: 139349

End: 140389

Strand: Reverse

Name: yjiA [H]

Synonym: pRL120138

Alternate gene names: 116248812

Gene position: 140389-139349 (Counterclockwise)

Preceding gene: 116248813

Following gene: 116248811

Centisome position: 16.14

GC content: 63.4

Gene sequence:

>1041_bases
ATGGCTGATGCATTTCCGGCCTTCACGCCCGTCACGTTGCTGACCGGCTTTCTCGGATCCGGCAAGACGACGCTGCTGCG
CCGGCTGCTGACCGATCCGGCGCTCTCGAACGCCGCGGTGCTGATCAACGAATTCGGCGAGGCCGGGCTCGACCATCACC
TGCTCGAGCGCATCGACGAAAACATGGTGCTTTTACAATCCGGTTGCCTTTGCTGCACGGTGCGGGGCGAACTGGCCGAT
GCGATCCGCGACCTGCATTCGAAGCGCGAACGCGGCATCGTCCCGCCCTTCGACAGGATTGTCATCGAGAGCACCGGACT
TGCCGATCCTTTCCCCGTTCTTTCCACGTTGAAGGCCGATCCGGTTCTGCGGCATCATTTCCGGTCCTCGGGCGTGATTG
CCACCGTCGATACCGTCAATGCGGGGAGGCAGCTTGCCGCCTATCGCGAACCGATGCGGCAGGTGGCGGTGGCCGACCTT
CTGGTGCTGACCAAGGCCGACATCGCCGAGGCCGGCCAGGTTGCGCGGGTAACGGCGATGATCCGGCAGATCAATCCGGA
TGCGCCGATTGTCCTGGGCTCGGACGACGTCGTCAGTCTGATGGAGGACATGACAACCGGCCGCGCCGAGGCGATGCAGT
CGCCGGGCGGCTTCTATTGCGACGACCCGGGGCCGGTTCTTGCCAGCGAACATTCCGGTGGTATCCGGTCCTTCGTGCTG
GTGAGCGAAGGCACGGTCGACTGGACAGCCTTCGGGATCTGGCTGACCATGCTGCTCAATCGGCACGGCGACCGTATCCT
TCGGGTCAAGGGTATTCTCAACATCGAGGGCGAAGACTTTCCCGTGGCGATCCACGGCGTGCAGCATCTGGTCCATACGC
CCGTCCATATGCAATCGTGGCCCGGCGGGGACCGGTGCTCCCGCATCGTCTTCATCGTCGACGGCATCGCGCCCGAAGTG
ATCAAGCGATCGTTTGACGCCTTCAATGGGCTCGGCGTGGCAAAAGTCGCGCCGAAGCGGGTCGAGGAGTTGCAGCCATG
A

Upstream 100 bases:

>100_bases
GAAGATCTCGGACATCTTTGGCCGGCGGCCGAGCGGCTTGCGGGCCGGCCGCTCGATCCGCTCGCCGAGCCGCTTCTCGA
CCGACTGGAGGCGAACCGCC

Downstream 100 bases:

>100_bases
GAAAAATGCCGAAGAGCTTTCCGACGCCCGCCCTGCATACAGAGGGCCGGATCAAGCTGCGCATCCTCGGCACGGCGATT
TCGCTTCTCGAAGAACTTCG

Product: cobW family cobalimin synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MADAFPAFTPVTLLTGFLGSGKTTLLRRLLTDPALSNAAVLINEFGEAGLDHHLLERIDENMVLLQSGCLCCTVRGELAD
AIRDLHSKRERGIVPPFDRIVIESTGLADPFPVLSTLKADPVLRHHFRSSGVIATVDTVNAGRQLAAYREPMRQVAVADL
LVLTKADIAEAGQVARVTAMIRQINPDAPIVLGSDDVVSLMEDMTTGRAEAMQSPGGFYCDDPGPVLASEHSGGIRSFVL
VSEGTVDWTAFGIWLTMLLNRHGDRILRVKGILNIEGEDFPVAIHGVQHLVHTPVHMQSWPGGDRCSRIVFIVDGIAPEV
IKRSFDAFNGLGVAKVAPKRVEELQP

Sequences:

>Translated_346_residues
MADAFPAFTPVTLLTGFLGSGKTTLLRRLLTDPALSNAAVLINEFGEAGLDHHLLERIDENMVLLQSGCLCCTVRGELAD
AIRDLHSKRERGIVPPFDRIVIESTGLADPFPVLSTLKADPVLRHHFRSSGVIATVDTVNAGRQLAAYREPMRQVAVADL
LVLTKADIAEAGQVARVTAMIRQINPDAPIVLGSDDVVSLMEDMTTGRAEAMQSPGGFYCDDPGPVLASEHSGGIRSFVL
VSEGTVDWTAFGIWLTMLLNRHGDRILRVKGILNIEGEDFPVAIHGVQHLVHTPVHMQSWPGGDRCSRIVFIVDGIAPEV
IKRSFDAFNGLGVAKVAPKRVEELQP
>Mature_345_residues
ADAFPAFTPVTLLTGFLGSGKTTLLRRLLTDPALSNAAVLINEFGEAGLDHHLLERIDENMVLLQSGCLCCTVRGELADA
IRDLHSKRERGIVPPFDRIVIESTGLADPFPVLSTLKADPVLRHHFRSSGVIATVDTVNAGRQLAAYREPMRQVAVADLL
VLTKADIAEAGQVARVTAMIRQINPDAPIVLGSDDVVSLMEDMTTGRAEAMQSPGGFYCDDPGPVLASEHSGGIRSFVLV
SEGTVDWTAFGIWLTMLLNRHGDRILRVKGILNIEGEDFPVAIHGVQHLVHTPVHMQSWPGGDRCSRIVFIVDGIAPEVI
KRSFDAFNGLGVAKVAPKRVEELQP

Specific function: Binds GTP. May function as GTP-dependent regulator [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI33469141, Length=349, Percent_Identity=30.0859598853868, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI223941779, Length=340, Percent_Identity=29.7058823529412, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI126722884, Length=349, Percent_Identity=29.512893982808, Blast_Score=118, Evalue=7e-27,
Organism=Homo sapiens, GI148727351, Length=349, Percent_Identity=29.512893982808, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI146231952, Length=349, Percent_Identity=29.2263610315186, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI223941776, Length=354, Percent_Identity=29.0960451977401, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI119120938, Length=148, Percent_Identity=37.1621621621622, Blast_Score=88, Evalue=9e-18,
Organism=Escherichia coli, GI87082430, Length=325, Percent_Identity=34.1538461538462, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1788499, Length=163, Percent_Identity=34.9693251533742, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324356, Length=370, Percent_Identity=25.4054054054054, Blast_Score=79, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 37446; Mature: 37314

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADAFPAFTPVTLLTGFLGSGKTTLLRRLLTDPALSNAAVLINEFGEAGLDHHLLERIDE
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHCC
NMVLLQSGCLCCTVRGELADAIRDLHSKRERGIVPPFDRIVIESTGLADPFPVLSTLKAD
CEEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCHHHHHHHCCC
PVLRHHFRSSGVIATVDTVNAGRQLAAYREPMRQVAVADLLVLTKADIAEAGQVARVTAM
HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
IRQINPDAPIVLGSDDVVSLMEDMTTGRAEAMQSPGGFYCDDPGPVLASEHSGGIRSFVL
HHHCCCCCCEEECCHHHHHHHHHHCCCHHHHHCCCCCEEECCCCCEEECCCCCCCEEEEE
VSEGTVDWTAFGIWLTMLLNRHGDRILRVKGILNIEGEDFPVAIHGVQHLVHTPVHMQSW
EECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC
PGGDRCSRIVFIVDGIAPEVIKRSFDAFNGLGVAKVAPKRVEELQP
CCCHHHCEEEEEECCCCHHHHHHHHHHHCCCCHHHCCHHHHHHCCC
>Mature Secondary Structure 
ADAFPAFTPVTLLTGFLGSGKTTLLRRLLTDPALSNAAVLINEFGEAGLDHHLLERIDE
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHCC
NMVLLQSGCLCCTVRGELADAIRDLHSKRERGIVPPFDRIVIESTGLADPFPVLSTLKAD
CEEEEECCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCHHHHHHHCCC
PVLRHHFRSSGVIATVDTVNAGRQLAAYREPMRQVAVADLLVLTKADIAEAGQVARVTAM
HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
IRQINPDAPIVLGSDDVVSLMEDMTTGRAEAMQSPGGFYCDDPGPVLASEHSGGIRSFVL
HHHCCCCCCEEECCHHHHHHHHHHCCCHHHHHCCCCCEEECCCCCEEECCCCCCCEEEEE
VSEGTVDWTAFGIWLTMLLNRHGDRILRVKGILNIEGEDFPVAIHGVQHLVHTPVHMQSW
EECCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCC
PGGDRCSRIVFIVDGIAPEVIKRSFDAFNGLGVAKVAPKRVEELQP
CCCHHHCEEEEEECCCCHHHHHHHHHHHCCCCHHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 1650347 [H]