Click here to switch to the map view.

The map label for this gene is ygiB [C]

Identifier: 116248767

GI number: 116248767

Start: 86421

End: 87014

Strand: Direct

Name: ygiB [C]

Synonym: pRL120091

Alternate gene names: 116248767

Gene position: 86421-87014 (Clockwise)

Preceding gene: 116248766

Following gene: 116248768

Centisome position: 9.93

GC content: 63.3

Gene sequence:

>594_bases
ATGCGCAGACGTAAGAGCGGGCACAAACGACCTTTCCTGGCCCTCGGCACGATCGCTGCCTCGACCCTGGCGCTGTCCGG
TTGCGGCGATCAGACTCCCTCGGAGGCAATGTTCACCTCCGTCGACCAATGCGTGACTTCCGGCATGGACCGGCAGGTCT
GCCAAGCCGGCTATCAGGATGCCATGCGGGCCCATCTCGCCGCCGCGCCGCGTTTCAACGGCATGGCCGCCTGCGAGGCC
GAATACGGCTCGGGTCAATGCGCTGAACAGCCGGCCAGTGCCGTCCCCAACAATACCGGCGGAGGCGGCAGCTTTTTCGT
GCCGTTCCTGACAGGCTACGTGCTGTCTTCCGCACTGAACAACATCGGCGACTATTACAATTATCGCCGGCGCCAGGAGG
AGAGTGGCTCCTACGGCTCGACACCGATTTATCGCAATCGCTCGGGACAAACGGTGACAACGACTGTTCGCTCGGGCGGC
AACGACACCGCGATCGCGCCCTCGCGTCAGACTGTCAAGCCGGTCAACGTCAACACTCGCACCGTTGCCCGTCAAGGCTT
CGGGGGTCGTTCGTCGTTCAGTTTCGGCGGCTGA

Upstream 100 bases:

>100_bases
CACTGCCGGCGATATCGCCGCGGGCTTATGGGGCGGCGGCATCGCGCTGGTCATCGGTATTCTCAACGCCGCCTGCATGA
CCTATTGAGGGGAGGGAACG

Downstream 100 bases:

>100_bases
CATGAAGCGCATCACACTTCCGGCGCGTCCCGATTGGCGTGACAAGGCGCGCGCCGTCGGCTTCGGGTTTCACGTCATGT
ATGGCGAACCCTACTGGCTC

Product: putative transmembrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MRRRKSGHKRPFLALGTIAASTLALSGCGDQTPSEAMFTSVDQCVTSGMDRQVCQAGYQDAMRAHLAAAPRFNGMAACEA
EYGSGQCAEQPASAVPNNTGGGGSFFVPFLTGYVLSSALNNIGDYYNYRRRQEESGSYGSTPIYRNRSGQTVTTTVRSGG
NDTAIAPSRQTVKPVNVNTRTVARQGFGGRSSFSFGG

Sequences:

>Translated_197_residues
MRRRKSGHKRPFLALGTIAASTLALSGCGDQTPSEAMFTSVDQCVTSGMDRQVCQAGYQDAMRAHLAAAPRFNGMAACEA
EYGSGQCAEQPASAVPNNTGGGGSFFVPFLTGYVLSSALNNIGDYYNYRRRQEESGSYGSTPIYRNRSGQTVTTTVRSGG
NDTAIAPSRQTVKPVNVNTRTVARQGFGGRSSFSFGG
>Mature_197_residues
MRRRKSGHKRPFLALGTIAASTLALSGCGDQTPSEAMFTSVDQCVTSGMDRQVCQAGYQDAMRAHLAAAPRFNGMAACEA
EYGSGQCAEQPASAVPNNTGGGGSFFVPFLTGYVLSSALNNIGDYYNYRRRQEESGSYGSTPIYRNRSGQTVTTTVRSGG
NDTAIAPSRQTVKPVNVNTRTVARQGFGGRSSFSFGG

Specific function: Unknown

COG id: COG5463

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693179, Length=202, Percent_Identity=26.2376237623762, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20849; Mature: 20849

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRKSGHKRPFLALGTIAASTLALSGCGDQTPSEAMFTSVDQCVTSGMDRQVCQAGYQD
CCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
AMRAHLAAAPRFNGMAACEAEYGSGQCAEQPASAVPNNTGGGGSFFVPFLTGYVLSSALN
HHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
NIGDYYNYRRRQEESGSYGSTPIYRNRSGQTVTTTVRSGGNDTAIAPSRQTVKPVNVNTR
HHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCHH
TVARQGFGGRSSFSFGG
HHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRRRKSGHKRPFLALGTIAASTLALSGCGDQTPSEAMFTSVDQCVTSGMDRQVCQAGYQD
CCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
AMRAHLAAAPRFNGMAACEAEYGSGQCAEQPASAVPNNTGGGGSFFVPFLTGYVLSSALN
HHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
NIGDYYNYRRRQEESGSYGSTPIYRNRSGQTVTTTVRSGGNDTAIAPSRQTVKPVNVNTR
HHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCHH
TVARQGFGGRSSFSFGG
HHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA