Click here to switch to the map view.

The map label for this gene is ygiC [H]

Identifier: 116248768

GI number: 116248768

Start: 87016

End: 88173

Strand: Direct

Name: ygiC [H]

Synonym: pRL120092

Alternate gene names: 116248768

Gene position: 87016-88173 (Clockwise)

Preceding gene: 116248767

Following gene: 116248778

Centisome position: 10.0

GC content: 59.67

Gene sequence:

>1158_bases
ATGAAGCGCATCACACTTCCGGCGCGTCCCGATTGGCGTGACAAGGCGCGCGCCGTCGGCTTCGGGTTTCACGTCATGTA
TGGCGAACCCTACTGGCTCGACGATGCCGCCTATACATTCACGCTCGATGAGATCGAGACACGGATTGAAGAGCCGAGCC
AGGAACTGCACGACATGTGCATGGATATGGTCGGTGATATCGTCAGAAGCGAAGAGTCGCTCGACAGGCTGGCCATTCCG
GAGGATCTGCGCGATGTGGTGCAGCGCTCCTGGCAGCGTCGCGACCGGCACCTCTACGGCCGGTTCGATCTTGCTTACGA
CGGGACTGGCCCGGCCAAGTTGCTCGAATATAACGCCGATACTCCCACTTCGGTGTTCGAGACAGCCTATTTCCAGTTCA
ACTGGCTGACCGACCAGGTGGCTTTGGGTATCCTGCCCAAGGATGCGGACCAGTACAATTCCTTGCAGGAAAGCCTCGTC
GAGGCGTTCGAGCAATTTTCCAAGGAGCCGATCTTCCACTTCGCGGCGATGACCGACAATGAGGAGGATCGCGGCACGAC
GGTCTATCTGATGGACTGTGCAGTGCAGGCCGGCCATCGTGTCGAGCTTCTGGATATCCGCGAGATCGGCATCGATGCAC
AGGGCCGTTACACCGATCTCAAGGATCGGGTGATCGACCGCTGCTTCAAGCTGTATCCGTGGGAATTCATGCTGCGCGAG
CCGTTCGCCCGCGACCTCGTGCGCTCGGGCGATGTTTTCGTCGAGCCCGCCTGGAAGGCCGTGCTTTCCAACAAAGGGCT
TTTGCCTCTGCTCTGGCAGCGGCACCCCAATCATCCCAACCTGCTGGCTAGCTATTTCGCCGACGACCCGGCGGCCTCGA
CTTTGAGCGATTATGTACGCAAACCACTGCTGTCGCGGGAAGGCGAGAACGTCACGATATTCCGAGATGGCCGGGAATTG
ATTTCCGCCCCCGGCGATTATGGCGACGAAGGTTTTATCGTCCAGGCCTATGCCCCGCTTTTCGAAAGCGATGGCGGCTT
CGCCGTGCTCGGCAGCTGGATCGTCGGTGATCGCGCCTGCGGTCTTGCGGTCCGCGAGGACCGCTCGCGCATAACCGCCA
ATCTATCGCGTTTCGTGCCGCACGTCATAGTCGGATAA

Upstream 100 bases:

>100_bases
GCGCCCTCGCGTCAGACTGTCAAGCCGGTCAACGTCAACACTCGCACCGTTGCCCGTCAAGGCTTCGGGGGTCGTTCGTC
GTTCAGTTTCGGCGGCTGAC

Downstream 100 bases:

>100_bases
GAGGAGATATATCGCTTCAGCCGCAGCGATCTTCGTCTCTTGCGGCGTTCACCCAGGTCGATATGGGAATAGGTGTGTCT
CATTGCGCTTGCCTTGCAAG

Product: putative glutathionylspermidine synthetase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MKRITLPARPDWRDKARAVGFGFHVMYGEPYWLDDAAYTFTLDEIETRIEEPSQELHDMCMDMVGDIVRSEESLDRLAIP
EDLRDVVQRSWQRRDRHLYGRFDLAYDGTGPAKLLEYNADTPTSVFETAYFQFNWLTDQVALGILPKDADQYNSLQESLV
EAFEQFSKEPIFHFAAMTDNEEDRGTTVYLMDCAVQAGHRVELLDIREIGIDAQGRYTDLKDRVIDRCFKLYPWEFMLRE
PFARDLVRSGDVFVEPAWKAVLSNKGLLPLLWQRHPNHPNLLASYFADDPAASTLSDYVRKPLLSREGENVTIFRDGREL
ISAPGDYGDEGFIVQAYAPLFESDGGFAVLGSWIVGDRACGLAVREDRSRITANLSRFVPHVIVG

Sequences:

>Translated_385_residues
MKRITLPARPDWRDKARAVGFGFHVMYGEPYWLDDAAYTFTLDEIETRIEEPSQELHDMCMDMVGDIVRSEESLDRLAIP
EDLRDVVQRSWQRRDRHLYGRFDLAYDGTGPAKLLEYNADTPTSVFETAYFQFNWLTDQVALGILPKDADQYNSLQESLV
EAFEQFSKEPIFHFAAMTDNEEDRGTTVYLMDCAVQAGHRVELLDIREIGIDAQGRYTDLKDRVIDRCFKLYPWEFMLRE
PFARDLVRSGDVFVEPAWKAVLSNKGLLPLLWQRHPNHPNLLASYFADDPAASTLSDYVRKPLLSREGENVTIFRDGREL
ISAPGDYGDEGFIVQAYAPLFESDGGFAVLGSWIVGDRACGLAVREDRSRITANLSRFVPHVIVG
>Mature_385_residues
MKRITLPARPDWRDKARAVGFGFHVMYGEPYWLDDAAYTFTLDEIETRIEEPSQELHDMCMDMVGDIVRSEESLDRLAIP
EDLRDVVQRSWQRRDRHLYGRFDLAYDGTGPAKLLEYNADTPTSVFETAYFQFNWLTDQVALGILPKDADQYNSLQESLV
EAFEQFSKEPIFHFAAMTDNEEDRGTTVYLMDCAVQAGHRVELLDIREIGIDAQGRYTDLKDRVIDRCFKLYPWEFMLRE
PFARDLVRSGDVFVEPAWKAVLSNKGLLPLLWQRHPNHPNLLASYFADDPAASTLSDYVRKPLLSREGENVTIFRDGREL
ISAPGDYGDEGFIVQAYAPLFESDGGFAVLGSWIVGDRACGLAVREDRSRITANLSRFVPHVIVG

Specific function: Unknown

COG id: COG0754

COG function: function code E; Glutathionylspermidine synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To the N-terminal of E.coli gsp and to E.coli yjfC [H]

Homologues:

Organism=Escherichia coli, GI1789416, Length=387, Percent_Identity=48.578811369509, Blast_Score=397, Evalue=1e-112,
Organism=Escherichia coli, GI1790629, Length=389, Percent_Identity=50.3856041131105, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1789361, Length=374, Percent_Identity=26.7379679144385, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005494
- InterPro:   IPR016185 [H]

Pfam domain/function: PF03738 GSP_synth [H]

EC number: NA

Molecular weight: Translated: 44040; Mature: 44040

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRITLPARPDWRDKARAVGFGFHVMYGEPYWLDDAAYTFTLDEIETRIEEPSQELHDMC
CCCCCCCCCCCHHHHHHHEEEEEEEEECCCEEECCCEEEEEHHHHHHHHCCHHHHHHHHH
MDMVGDIVRSEESLDRLAIPEDLRDVVQRSWQRRDRHLYGRFDLAYDGTGPAKLLEYNAD
HHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHEEEECCC
TPTSVFETAYFQFNWLTDQVALGILPKDADQYNSLQESLVEAFEQFSKEPIFHFAAMTDN
CCHHHHHHHHEEEEEEHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
EEDRGTTVYLMDCAVQAGHRVELLDIREIGIDAQGRYTDLKDRVIDRCFKLYPWEFMLRE
CCCCCCEEEEEEEECCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHC
PFARDLVRSGDVFVEPAWKAVLSNKGLLPLLWQRHPNHPNLLASYFADDPAASTLSDYVR
HHHHHHHHCCCEEECHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHH
KPLLSREGENVTIFRDGRELISAPGDYGDEGFIVQAYAPLFESDGGFAVLGSWIVGDRAC
HHHHHCCCCEEEEEECCHHHHCCCCCCCCCCEEEEEECHHHCCCCCEEEEEHHHHCCCCC
GLAVREDRSRITANLSRFVPHVIVG
CCEEHHHHHHHHHHHHHHCCHHHCC
>Mature Secondary Structure
MKRITLPARPDWRDKARAVGFGFHVMYGEPYWLDDAAYTFTLDEIETRIEEPSQELHDMC
CCCCCCCCCCCHHHHHHHEEEEEEEEECCCEEECCCEEEEEHHHHHHHHCCHHHHHHHHH
MDMVGDIVRSEESLDRLAIPEDLRDVVQRSWQRRDRHLYGRFDLAYDGTGPAKLLEYNAD
HHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCHHEEEECCC
TPTSVFETAYFQFNWLTDQVALGILPKDADQYNSLQESLVEAFEQFSKEPIFHFAAMTDN
CCHHHHHHHHEEEEEEHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
EEDRGTTVYLMDCAVQAGHRVELLDIREIGIDAQGRYTDLKDRVIDRCFKLYPWEFMLRE
CCCCCCEEEEEEEECCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHC
PFARDLVRSGDVFVEPAWKAVLSNKGLLPLLWQRHPNHPNLLASYFADDPAASTLSDYVR
HHHHHHHHCCCEEECHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHH
KPLLSREGENVTIFRDGRELISAPGDYGDEGFIVQAYAPLFESDGGFAVLGSWIVGDRAC
HHHHHCCCCEEEEEECCHHHHCCCCCCCCCCEEEEEECHHHCCCCCEEEEEHHHHCCCCC
GLAVREDRSRITANLSRFVPHVIVG
CCEEHHHHHHHHHHHHHHCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]