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The map label for this gene is yecS [C]

Identifier: 116248725

GI number: 116248725

Start: 49082

End: 49747

Strand: Direct

Name: yecS [C]

Synonym: pRL120049

Alternate gene names: 116248725

Gene position: 49082-49747 (Clockwise)

Preceding gene: 116248724

Following gene: 116248726

Centisome position: 5.64

GC content: 64.56

Gene sequence:

>666_bases
TTGCCGATGTCGGTATGGTCCGGCTATCTGACACTGATCCTTGAGGGCGCCCTGGTGACGCTCGAACTGACGATCATGGG
GTCTGCGCTGGCGTTGGTGATGGCCTTCCTGGCGGGCCTCGGCCGCCTGTCGCGCTTCTTCGCCGTGCGGGCTCTGGCGA
CGGCCTATATCGAGTTCTTCCGCGGCACCTCGATCTTCGTCCAGCTCTTCTGGGTCTATTTCGTGCTGCCCTTCGCGGGC
TTGACCCTGACGCCGCTGCAGGCGGGCGTGCTGGCGCTCGGGCTGAATGTCGGCGCCTATGCGGCGGAAGTGGTGCGCGG
CGCCGTCAAGGCTGTCGGGCGCGAACAGTCGGAAGCCTGCATCGCGCTCAACCTTTCGCGATACCAGCGCATGCGCCACG
TTATCCTGCCGCAGGCGCTGCCGCTGATGCTGCCGACCTTTTGCAACAATGCGATCGAACTCTTGAAGGGCACGGCCGTC
GTGTCGCTGATCTCGCTGACGGATATGACGTTCCAGGCGCAGGTGGTGCGGGCGCAGACCGGCAATACGCTGGTGCCCTT
CGCGACGATCCTCATCCTCTATTTTCTCATGGCCTCGGCGATCTCCGCGACGATGCGCTGGCTGGAGCGGCGGATGGCAC
GCAGCCTCGACGGCATAAGGACCTGA

Upstream 100 bases:

>100_bases
TCTTTCAGATGCACTCCTCGCGCTTTAGGTCCTTGTTTTTACGCATGTCGTTATCGCAAAACCGCTGCACAGTTTTGTGC
GACATGCTCTAGGAAGTGAG

Downstream 100 bases:

>100_bases
TCAGATGGAATGGGATTGGGACTTCGTCTGGCAGATCATGCCGACCCTTCTCGAAGGGTTCAAGATCACTCTTCTCGCGA
CCATCCTCGGCGCTGCAGTC

Product: putative permease component of ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MPMSVWSGYLTLILEGALVTLELTIMGSALALVMAFLAGLGRLSRFFAVRALATAYIEFFRGTSIFVQLFWVYFVLPFAG
LTLTPLQAGVLALGLNVGAYAAEVVRGAVKAVGREQSEACIALNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAV
VSLISLTDMTFQAQVVRAQTGNTLVPFATILILYFLMASAISATMRWLERRMARSLDGIRT

Sequences:

>Translated_221_residues
MPMSVWSGYLTLILEGALVTLELTIMGSALALVMAFLAGLGRLSRFFAVRALATAYIEFFRGTSIFVQLFWVYFVLPFAG
LTLTPLQAGVLALGLNVGAYAAEVVRGAVKAVGREQSEACIALNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAV
VSLISLTDMTFQAQVVRAQTGNTLVPFATILILYFLMASAISATMRWLERRMARSLDGIRT
>Mature_220_residues
PMSVWSGYLTLILEGALVTLELTIMGSALALVMAFLAGLGRLSRFFAVRALATAYIEFFRGTSIFVQLFWVYFVLPFAGL
TLTPLQAGVLALGLNVGAYAAEVVRGAVKAVGREQSEACIALNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAVV
SLISLTDMTFQAQVVRAQTGNTLVPFATILILYFLMASAISATMRWLERRMARSLDGIRT

Specific function: Probably part of the binding-protein-dependent transport system y4tEFGH for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=35.4368932038835, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1787030, Length=211, Percent_Identity=36.9668246445498, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1786873, Length=216, Percent_Identity=29.1666666666667, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=31.1926605504587, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI87082239, Length=202, Percent_Identity=34.1584158415842, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786874, Length=223, Percent_Identity=30.0448430493274, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788645, Length=214, Percent_Identity=29.4392523364486, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787086, Length=213, Percent_Identity=25.8215962441315, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787087, Length=138, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994930, Length=137, Percent_Identity=32.1167883211679, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515
- InterPro:   IPR014342 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24157; Mature: 24026

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMSVWSGYLTLILEGALVTLELTIMGSALALVMAFLAGLGRLSRFFAVRALATAYIEFF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGTSIFVQLFWVYFVLPFAGLTLTPLQAGVLALGLNVGAYAAEVVRGAVKAVGREQSEAC
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHH
IALNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAVVSLISLTDMTFQAQVVRAQT
HEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNTLVPFATILILYFLMASAISATMRWLERRMARSLDGIRT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PMSVWSGYLTLILEGALVTLELTIMGSALALVMAFLAGLGRLSRFFAVRALATAYIEFF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RGTSIFVQLFWVYFVLPFAGLTLTPLQAGVLALGLNVGAYAAEVVRGAVKAVGREQSEAC
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHH
IALNLSRYQRMRHVILPQALPLMLPTFCNNAIELLKGTAVVSLISLTDMTFQAQVVRAQT
HEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GNTLVPFATILILYFLMASAISATMRWLERRMARSLDGIRT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]