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The map label for this gene is repB [H]

Identifier: 116248678

GI number: 116248678

Start: 1199

End: 2200

Strand: Direct

Name: repB [H]

Synonym: pRL120002

Alternate gene names: 116248678

Gene position: 1199-2200 (Clockwise)

Preceding gene: 116248677

Following gene: 116248679

Centisome position: 0.14

GC content: 62.28

Gene sequence:

>1002_bases
ATGGCGCGCAAGAACCTCATCGAAATCTCCGCTCCGAGCCCGGAAAGAATGGACGCAGTCGCACCGCGCGACAATCGCCC
GATCGCGGGATTCGTGCCGCAGGAGCGCAGTGCAGCGCCGGTCGGCGGCATCACCAAGACGCTCGGCAACATTACCGAGA
AAATGGAGCGGGCGAGTGAGCTGGAACGGCAGCTTGCCACCGGCCAGACCATCGTTGAACTCGATCCCGGGCTGATCGAC
GCTTCCTTCGTCAGCGATCGATTGGCGATCGATGCGGCCGAACTTGCGCAACTTGTCGAGCAGATCCGCGAGCATGGGCA
GCAGGTTCCGATCCTTGTCCGCCCGCATCCCGAAACCAGGGGACGCTATCAGGTCGCCTACGGCCATCGGCGCCTGGCTG
CCACCCGAGAAATCGGCATCCGGGTGCGCGCGGTCGTCCGCGATCTCACCGACGGTCAACTGGTCGTCAGCCAGGGACAG
GAAAACAGCGCTCGAACCAATCTCTCCTACATCGAGCGCGCGCTCTTCGCATCACGGCTCGAGGAACGCAGCTTTGGCCG
CGATGTCATCATGGCGGCTCTCGGTGTGGACAAGGCGGCGCTGTCGAGAATGCTGATCGTCATACGACAGGTCCCCCTTG
ATCTCGTCAACGCCATAGGTGCGGCACCTGATATCGGCCGCCGGCGATGGTTGGAACTGGGCGAGCGGCTTGAGAAAGCC
GACGTCGAAAAGATCGTCGCCGAGTTGTCCGCGGACGACGCGCGCAAAATTTCGAGCGACGAGCGGTTTCAGCGGGCACT
CGTTCTGGCAACGAAGAAGACGGCCGCGCCGAAGCCGGCGATGGCCAAAACCCAGGTTAGCGGCGTGCCTGTCATGATCA
AGAAGACAGCATCCGGTGCGACCTTCGTCTTCGACGGCAAGACCGCGCCCGGTTTCGATCAATTCGTCCAGGAAAGGCTG
AAGGGCCTGTTCCAGGAGTTCAACAAGGACAGAGGAGCGTAG

Upstream 100 bases:

>100_bases
TTCACACGCGGAACCTACGATCGGGCTCTGGAGTCCCTCAATCTCGTGAACGGCGAGATCGAGGCGCATATTCGCTCGAC
CTGGGGGAGGAAATAGATAG

Downstream 100 bases:

>100_bases
CGCGCAAAAGAAAAAGGCCCCCAACGACGCCGTCGTGGAAGCCCTTCTCAGATCTTAAGCACATCGAGAATCGCATTTCC
ACGAATCACAGTCAAGCGTC

Product: putative replication protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MARKNLIEISAPSPERMDAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASELERQLATGQTIVELDPGLID
ASFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETRGRYQVAYGHRRLAATREIGIRVRAVVRDLTDGQLVVSQGQ
ENSARTNLSYIERALFASRLEERSFGRDVIMAALGVDKAALSRMLIVIRQVPLDLVNAIGAAPDIGRRRWLELGERLEKA
DVEKIVAELSADDARKISSDERFQRALVLATKKTAAPKPAMAKTQVSGVPVMIKKTASGATFVFDGKTAPGFDQFVQERL
KGLFQEFNKDRGA

Sequences:

>Translated_333_residues
MARKNLIEISAPSPERMDAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASELERQLATGQTIVELDPGLID
ASFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETRGRYQVAYGHRRLAATREIGIRVRAVVRDLTDGQLVVSQGQ
ENSARTNLSYIERALFASRLEERSFGRDVIMAALGVDKAALSRMLIVIRQVPLDLVNAIGAAPDIGRRRWLELGERLEKA
DVEKIVAELSADDARKISSDERFQRALVLATKKTAAPKPAMAKTQVSGVPVMIKKTASGATFVFDGKTAPGFDQFVQERL
KGLFQEFNKDRGA
>Mature_332_residues
ARKNLIEISAPSPERMDAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASELERQLATGQTIVELDPGLIDA
SFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETRGRYQVAYGHRRLAATREIGIRVRAVVRDLTDGQLVVSQGQE
NSARTNLSYIERALFASRLEERSFGRDVIMAALGVDKAALSRMLIVIRQVPLDLVNAIGAAPDIGRRRWLELGERLEKAD
VEKIVAELSADDARKISSDERFQRALVLATKKTAAPKPAMAKTQVSGVPVMIKKTASGATFVFDGKTAPGFDQFVQERLK
GLFQEFNKDRGA

Specific function: This protein is coded by a hairy root Ri plasmid, it is probably involved in its replication [H]

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115
- InterPro:   IPR017819
- InterPro:   IPR011111 [H]

Pfam domain/function: PF02195 ParBc; PF07506 RepB [H]

EC number: NA

Molecular weight: Translated: 36578; Mature: 36447

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKNLIEISAPSPERMDAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASE
CCCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LERQLATGQTIVELDPGLIDASFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETR
HHHHHHCCCEEEEECCCCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
GRYQVAYGHRRLAATREIGIRVRAVVRDLTDGQLVVSQGQENSARTNLSYIERALFASRL
CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
EERSFGRDVIMAALGVDKAALSRMLIVIRQVPLDLVNAIGAAPDIGRRRWLELGERLEKA
HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DVEKIVAELSADDARKISSDERFQRALVLATKKTAAPKPAMAKTQVSGVPVMIKKTASGA
HHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEECCCCC
TFVFDGKTAPGFDQFVQERLKGLFQEFNKDRGA
EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARKNLIEISAPSPERMDAVAPRDNRPIAGFVPQERSAAPVGGITKTLGNITEKMERASE
CCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LERQLATGQTIVELDPGLIDASFVSDRLAIDAAELAQLVEQIREHGQQVPILVRPHPETR
HHHHHHCCCEEEEECCCCEEHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
GRYQVAYGHRRLAATREIGIRVRAVVRDLTDGQLVVSQGQENSARTNLSYIERALFASRL
CCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
EERSFGRDVIMAALGVDKAALSRMLIVIRQVPLDLVNAIGAAPDIGRRRWLELGERLEKA
HHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
DVEKIVAELSADDARKISSDERFQRALVLATKKTAAPKPAMAKTQVSGVPVMIKKTASGA
HHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEECCCCC
TFVFDGKTAPGFDQFVQERLKGLFQEFNKDRGA
EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA