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The map label for this gene is repC

Identifier: 116248679

GI number: 116248679

Start: 2355

End: 3659

Strand: Direct

Name: repC

Synonym: pRL120003

Alternate gene names: NA

Gene position: 2355-3659 (Clockwise)

Preceding gene: 116248678

Following gene: 116248680

Centisome position: 0.27

GC content: 61.76

Gene sequence:

>1305_bases
ATGGAGAGTGGATATGTGACGACGCCCTTTGGGCGGCGGCCGATGTCGCTTGGCATGCTGGCAAGCCAGCAACTGGCCGA
GACCATCGAGCCGGGGATGAAACGCAGCAAATGGAAGCTGTTCAGGGCGATCTGCGAAGCGCGGCCTGCGCTTGGCGTCA
CCGATCGGGCGTTGACGGTGCTCGACGCGCTTTTGACCTTCTACCCTGACGACGAGATCTCCGAGGAAAAGGGACTGATC
GTCTTCCCGTCGAATGCGCAGCTTTCGTTGCGCGCTCGTGGCATGACGTCAGCCACCCTCAGGCGGCATCTTGCCGTCCT
GGTCGAGGCCGGCCTGATCCTGCGCAAGGACAGCCCGAATGGAAAGCGTTATGCGCGCCGCGACAGGGCAGGGGCCATCG
GCGAGGCCTTCGGCTTCAGCGTCGCACCGCTCCTGGCCCGTGCTGTCGAAATCGAAAGCCTGGCCGCCCAGGCGGTTGCT
GACCGGGAGTTGCTGCGGGTGACCAGGGAACGCCTGACGCTGTGCCGGCGCGATATCTCCAAGCTGATCGCGGCGGCCCT
CGAAGAAGGGGTTTCCGGTGATTGGGAAGACATTTCGGTGATGTTTCGAGCGCTTCTTGCCCGAATTCCACGCGTGGCGA
CCGCCGAAGACCTGGCACCACTGCTCGACGAGATGAGGCTACTGCGCGCCGAGGTCGTCAACATGCTGGAAAGACGGCTA
AAAACAAAAAAAATAGACGCCAATGAGTCTCAAATTGAGCATCACAAACAGAATTCAAATCCCGACTCCACTTATGAACT
TGAACCAAGCTTCGAAACGAAGCAGGGCGAAAAGGCAGCGGCCGATAATGACCCGAACGCCGGGCCTTCGGACGAACGAA
GATTGAAACAGCAAAAGCCTTCCGGCGGGATGAGCAACAGGGCGGAGGGCGCGGCCGATCCGGGCGCCGGACCAGGCCTG
AAATCCTTCCCGCTCGGCCTCGTCCTCCAGGCCTGCCCCAGTATTCTCGATTACGGGCCTGGAGGAAGCATCGGCAATTG
GCGAGACCTGATGTCGGCCGCCGTCGTCGTGCGCTCGATGCTCGGCGTCAGTCCCTCGGCCTATGAGGAAGCCTGCTCCG
GCATGGGGCCGGAAAACGCCGCAACCGTGATCGCCTGCATCCTGGAAAGGGGAGGGCACATCAACTCACCCGGCGGTTAT
CTCAGAGATCTGACCCGAAGGACCGAAAGGGGCGAATTTGCGATCGGACCGATGCTGATGGCGCTCGTGCGGGCGAACGG
GCTGACGGCGAGGCATGCCAGTTGA

Upstream 100 bases:

>100_bases
TTAAGCACATCGAGAATCGCATTTCCACGAATCACAGTCAAGCGTCTTAGGCACCAAATTGGTGGATGGTTTTCTTTTGC
CTGAACGAAGGTGAAGGCAA

Downstream 100 bases:

>100_bases
TCGTGAGAAAGCGACTGCGTCGACATGGGTGTAGCGAGGCAGTGTACAATCACCTCTTTACATCTAACATGTTAGTTTGC
TACATCTGATCCATTCTTTG

Product: replication initiation protein RepC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTVLDALLTFYPDDEISEEKGLI
VFPSNAQLSLRARGMTSATLRRHLAVLVEAGLILRKDSPNGKRYARRDRAGAIGEAFGFSVAPLLARAVEIESLAAQAVA
DRELLRVTRERLTLCRRDISKLIAAALEEGVSGDWEDISVMFRALLARIPRVATAEDLAPLLDEMRLLRAEVVNMLERRL
KTKKIDANESQIEHHKQNSNPDSTYELEPSFETKQGEKAAADNDPNAGPSDERRLKQQKPSGGMSNRAEGAADPGAGPGL
KSFPLGLVLQACPSILDYGPGGSIGNWRDLMSAAVVVRSMLGVSPSAYEEACSGMGPENAATVIACILERGGHINSPGGY
LRDLTRRTERGEFAIGPMLMALVRANGLTARHAS

Sequences:

>Translated_434_residues
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTVLDALLTFYPDDEISEEKGLI
VFPSNAQLSLRARGMTSATLRRHLAVLVEAGLILRKDSPNGKRYARRDRAGAIGEAFGFSVAPLLARAVEIESLAAQAVA
DRELLRVTRERLTLCRRDISKLIAAALEEGVSGDWEDISVMFRALLARIPRVATAEDLAPLLDEMRLLRAEVVNMLERRL
KTKKIDANESQIEHHKQNSNPDSTYELEPSFETKQGEKAAADNDPNAGPSDERRLKQQKPSGGMSNRAEGAADPGAGPGL
KSFPLGLVLQACPSILDYGPGGSIGNWRDLMSAAVVVRSMLGVSPSAYEEACSGMGPENAATVIACILERGGHINSPGGY
LRDLTRRTERGEFAIGPMLMALVRANGLTARHAS
>Mature_434_residues
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTVLDALLTFYPDDEISEEKGLI
VFPSNAQLSLRARGMTSATLRRHLAVLVEAGLILRKDSPNGKRYARRDRAGAIGEAFGFSVAPLLARAVEIESLAAQAVA
DRELLRVTRERLTLCRRDISKLIAAALEEGVSGDWEDISVMFRALLARIPRVATAEDLAPLLDEMRLLRAEVVNMLERRL
KTKKIDANESQIEHHKQNSNPDSTYELEPSFETKQGEKAAADNDPNAGPSDERRLKQQKPSGGMSNRAEGAADPGAGPGL
KSFPLGLVLQACPSILDYGPGGSIGNWRDLMSAAVVVRSMLGVSPSAYEEACSGMGPENAATVIACILERGGHINSPGGY
LRDLTRRTERGEFAIGPMLMALVRANGLTARHAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.rhizogenes possible replication protein C (repC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005090
- InterPro:   IPR021760
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03428 RP-C; PF11800 RP-C_C [H]

EC number: NA

Molecular weight: Translated: 47043; Mature: 47043

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LDALLTFYPDDEISEEKGLIVFPSNAQLSLRARGMTSATLRRHLAVLVEAGLILRKDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEECCCCC
GKRYARRDRAGAIGEAFGFSVAPLLARAVEIESLAAQAVADRELLRVTRERLTLCRRDIS
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIAAALEEGVSGDWEDISVMFRALLARIPRVATAEDLAPLLDEMRLLRAEVVNMLERRL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KTKKIDANESQIEHHKQNSNPDSTYELEPSFETKQGEKAAADNDPNAGPSDERRLKQQKP
HHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
SGGMSNRAEGAADPGAGPGLKSFPLGLVLQACPSILDYGPGGSIGNWRDLMSAAVVVRSM
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LGVSPSAYEEACSGMGPENAATVIACILERGGHINSPGGYLRDLTRRTERGEFAIGPMLM
HCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHH
ALVRANGLTARHAS
HHHHHCCCCCCCCC
>Mature Secondary Structure
MESGYVTTPFGRRPMSLGMLASQQLAETIEPGMKRSKWKLFRAICEARPALGVTDRALTV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LDALLTFYPDDEISEEKGLIVFPSNAQLSLRARGMTSATLRRHLAVLVEAGLILRKDSPN
HHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEECCCCC
GKRYARRDRAGAIGEAFGFSVAPLLARAVEIESLAAQAVADRELLRVTRERLTLCRRDIS
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLIAAALEEGVSGDWEDISVMFRALLARIPRVATAEDLAPLLDEMRLLRAEVVNMLERRL
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KTKKIDANESQIEHHKQNSNPDSTYELEPSFETKQGEKAAADNDPNAGPSDERRLKQQKP
HHHCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
SGGMSNRAEGAADPGAGPGLKSFPLGLVLQACPSILDYGPGGSIGNWRDLMSAAVVVRSM
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LGVSPSAYEEACSGMGPENAATVIACILERGGHINSPGGYLRDLTRRTERGEFAIGPMLM
HCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHH
ALVRANGLTARHAS
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]