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The map label for this gene is yciR [C]

Identifier: 114800534

GI number: 114800534

Start: 1452665

End: 1455043

Strand: Direct

Name: yciR [C]

Synonym: HNE_1423

Alternate gene names: 114800534

Gene position: 1452665-1455043 (Clockwise)

Preceding gene: 114797588

Following gene: 114797347

Centisome position: 39.21

GC content: 60.87

Gene sequence:

>2379_bases
ATGCCGTATCGTCAGGATGGCTCGGCGACGCTTTGGTCGTTGAGGATGCTCATGCAGGGCGTGGAGGTGCCGGAAAAGCA
CATCCCTGGCCTGCGCGCTCAGCAGATGAATTCGATGAGCCGGATCACGAACGTGATCATCCTCTCGAACGTGCTCAACA
TCATCGCGATTCTCGCCATCTTCCTGAATTACGGCCAGACGCATTTTCTTTATGCGTGGTCCGTCTGTGGTCTGATCATC
AATATCGGCGCCTGGTTCAAATACCGCAGCTTTCTGCGCATAAACCCTCAGCGCCGCAGCAACCGCCGCGCCATCGCAGA
CTTCACCCGCGTCGCCATCTGCAATGGACTGCTCTGGGGGCTCGCGCCGATCGTTGTGCTGGGCACCGCCGATGTGCAGG
GCCACATGGTCATGGGTATCATCTCGGCGGGCATGATGTTCGCCGGCGGTTTCCTGCTCTCGCGTATCCCGATTGCGGCC
ATCTATTACATCGTTCCGTCGGGCCTGGGGCTCGCGACAGCCCTGATGCTCCAGACCGGCCCGAAATATTCGATCCTCTC
CATCCTGATGGTCTATTATCTCATGGTGCTGCTGGTCGCCGTGGCCTGGACCCACCGCCAGTTCGTCGAACAATATCTTG
GCCGCGCCGCCATTCAGGAACAATCCGAGCTGATCGGTCTCCTGCTGCGCGACTTTGAAGAGAGCACATCGGATTCGCTC
TGGCAGACGGATGAAGCGGGCGTATTGCAGGAACTCCCGATTGTGGCCGAAGCCACCGACTCGCTCTGGAGCGCGAATGA
AGTGCTGCGCCGCGGCGCGCCATTGACCAGCATCTTCCATCCCGGCGAAGCGCGCGACGCGCTGCAGGCTGCGCTGGAGG
GACAGGTTCCCTTCCGCGATCAGGTCGTGCCGATCAAGGACGGAAATGGAGAGATGCACTGGTGGTCGGTCACCGGCAAA
CCAGTGATTGAGCGCGGACAGTTCTTCGGCTTTCGCGGGGTCGCCTCGGATGTGACCCAGTCCAAGAAGATCGAAGACCG
CATCGCGCATATGGCCCATTATGACGGCCTCACCGGCCTGCCCAACCGCATCACGATGCAGGAGCGCCTGGAGAGTCTGC
TACGCCGTCAGCCGCCGCCGCCGGCCTGCCGCGCCTTGCTGATGATGGACCTCGACAGCTTTAAATGGGTCAATGATACG
CTCGGTCACCCTGCCGGCGATGAGCTCCTCCGCCAGGTGGCGGCGCGCATCCGGGCCCTGTCGGAACCCGGTGATTTTGT
CGCCCGGCTTGGCGGCGATGAATTTGCCATGGTGGTGGAGCGGCGCAATGTGCATGACCTGCATGGCTTCCTGGACCAGT
TCGCCTCCGAGATGAGCGAGCTTTACGATGTGTGGGGATCAACCGCGAACTCTTCAGCGTCCATCGGCGTGCGTCTGTTC
GATCCTGCGATCCATGACAGCCGCACAATGTTCCGTCAGGCAGACCTCGCGCTCTATCAGGCCAAGCATCTGGGCAAAGC
CAAATGGTGCATGTTTGACGATGAGCTGGAGCAACGCGCCCAGGCCCGCCTCGACATTCAGGAGGAGCTTCAGCGCGCCA
TTGACCGCAATGAACTGCGCATACATTTCCAGCCAATCGTCGATGCCACGACCCACAAGACCGTCGCTTGCGAAACACTC
CTGCGCTGGCAGCATCCCGAACGCGGCCTCGTCTATCCCGGCGAGTTCATCGAGCACGCGGAAGAAAACGGCCTCATCAC
GCGCATGGGAGAATGGGTCATCCGCGCGGCCCTCGCCGAGGCGACCCGTCTGCCCGAGCATGTGCGTATCTGCGTGAACA
TATCGCCATTGCAGGTCCATTCCGCTTCGCTGGCCTCAACCATCGTCAATGCCATCGCCGCAAGCAATATGGACCCCAGC
CGCCTGGAGCTGGAAATCACCGAAACAGCGTTGATGAGCAATACCGAATTCACGCTCCGCCGCCTGCATCAGCTGCGCTC
GCTCGGCGTGCGGATTGCGCTGGATGATTTCGGAACGGGCTTCTCCTCGCTCAACCATCTGCGCTCTTTCCCGTTCGACC
GGATCAAGATCGACCGCACTTTTGTCAGCGACATCGAAACACGCGCCGACAGCCAGGCCATCACGAAATCCATGGTCAGC
CTTGCCCGGTCGCTGGGAATGCAGTGTACGGCAGAAGGTGTGGAGACCAGCCTGCAAGCCGAATATCTCAGCAAGCTGGG
ATGCGAGGAGTTGCAGGGCTACTTCTTCAGCCATGCCCATCCGCTGGAACAGCTGGGCCACCTTGTTCAACTCCAGAAGG
CGTCGGTTGCCCCGCCCCTTCAAATCCTCGAGGCCGGCGCGCAGAGCCGCGCCAGCTGA

Upstream 100 bases:

>100_bases
ACCGATCTTGGTCGCATGTGCCTAACCCGCTCATGATAACTATTCTCAGTAGAAACGCGGGGCGCTGTAAGCGTGTAAAA
GCGTGCAGGAGATGGGTGGC

Downstream 100 bases:

>100_bases
TCCCTCAACATCCGAAATGAAAGACGGAAGGGCGCTTATTCTGCGCCGTCGTCTGGCGTTTCCTCGGCAGGCTTTGGCGC
GCTGCGCCGGCCGAACAGAT

Product: putative sensory box-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 792; Mature: 791

Protein sequence:

>792_residues
MPYRQDGSATLWSLRMLMQGVEVPEKHIPGLRAQQMNSMSRITNVIILSNVLNIIAILAIFLNYGQTHFLYAWSVCGLII
NIGAWFKYRSFLRINPQRRSNRRAIADFTRVAICNGLLWGLAPIVVLGTADVQGHMVMGIISAGMMFAGGFLLSRIPIAA
IYYIVPSGLGLATALMLQTGPKYSILSILMVYYLMVLLVAVAWTHRQFVEQYLGRAAIQEQSELIGLLLRDFEESTSDSL
WQTDEAGVLQELPIVAEATDSLWSANEVLRRGAPLTSIFHPGEARDALQAALEGQVPFRDQVVPIKDGNGEMHWWSVTGK
PVIERGQFFGFRGVASDVTQSKKIEDRIAHMAHYDGLTGLPNRITMQERLESLLRRQPPPPACRALLMMDLDSFKWVNDT
LGHPAGDELLRQVAARIRALSEPGDFVARLGGDEFAMVVERRNVHDLHGFLDQFASEMSELYDVWGSTANSSASIGVRLF
DPAIHDSRTMFRQADLALYQAKHLGKAKWCMFDDELEQRAQARLDIQEELQRAIDRNELRIHFQPIVDATTHKTVACETL
LRWQHPERGLVYPGEFIEHAEENGLITRMGEWVIRAALAEATRLPEHVRICVNISPLQVHSASLASTIVNAIAASNMDPS
RLELEITETALMSNTEFTLRRLHQLRSLGVRIALDDFGTGFSSLNHLRSFPFDRIKIDRTFVSDIETRADSQAITKSMVS
LARSLGMQCTAEGVETSLQAEYLSKLGCEELQGYFFSHAHPLEQLGHLVQLQKASVAPPLQILEAGAQSRAS

Sequences:

>Translated_792_residues
MPYRQDGSATLWSLRMLMQGVEVPEKHIPGLRAQQMNSMSRITNVIILSNVLNIIAILAIFLNYGQTHFLYAWSVCGLII
NIGAWFKYRSFLRINPQRRSNRRAIADFTRVAICNGLLWGLAPIVVLGTADVQGHMVMGIISAGMMFAGGFLLSRIPIAA
IYYIVPSGLGLATALMLQTGPKYSILSILMVYYLMVLLVAVAWTHRQFVEQYLGRAAIQEQSELIGLLLRDFEESTSDSL
WQTDEAGVLQELPIVAEATDSLWSANEVLRRGAPLTSIFHPGEARDALQAALEGQVPFRDQVVPIKDGNGEMHWWSVTGK
PVIERGQFFGFRGVASDVTQSKKIEDRIAHMAHYDGLTGLPNRITMQERLESLLRRQPPPPACRALLMMDLDSFKWVNDT
LGHPAGDELLRQVAARIRALSEPGDFVARLGGDEFAMVVERRNVHDLHGFLDQFASEMSELYDVWGSTANSSASIGVRLF
DPAIHDSRTMFRQADLALYQAKHLGKAKWCMFDDELEQRAQARLDIQEELQRAIDRNELRIHFQPIVDATTHKTVACETL
LRWQHPERGLVYPGEFIEHAEENGLITRMGEWVIRAALAEATRLPEHVRICVNISPLQVHSASLASTIVNAIAASNMDPS
RLELEITETALMSNTEFTLRRLHQLRSLGVRIALDDFGTGFSSLNHLRSFPFDRIKIDRTFVSDIETRADSQAITKSMVS
LARSLGMQCTAEGVETSLQAEYLSKLGCEELQGYFFSHAHPLEQLGHLVQLQKASVAPPLQILEAGAQSRAS
>Mature_791_residues
PYRQDGSATLWSLRMLMQGVEVPEKHIPGLRAQQMNSMSRITNVIILSNVLNIIAILAIFLNYGQTHFLYAWSVCGLIIN
IGAWFKYRSFLRINPQRRSNRRAIADFTRVAICNGLLWGLAPIVVLGTADVQGHMVMGIISAGMMFAGGFLLSRIPIAAI
YYIVPSGLGLATALMLQTGPKYSILSILMVYYLMVLLVAVAWTHRQFVEQYLGRAAIQEQSELIGLLLRDFEESTSDSLW
QTDEAGVLQELPIVAEATDSLWSANEVLRRGAPLTSIFHPGEARDALQAALEGQVPFRDQVVPIKDGNGEMHWWSVTGKP
VIERGQFFGFRGVASDVTQSKKIEDRIAHMAHYDGLTGLPNRITMQERLESLLRRQPPPPACRALLMMDLDSFKWVNDTL
GHPAGDELLRQVAARIRALSEPGDFVARLGGDEFAMVVERRNVHDLHGFLDQFASEMSELYDVWGSTANSSASIGVRLFD
PAIHDSRTMFRQADLALYQAKHLGKAKWCMFDDELEQRAQARLDIQEELQRAIDRNELRIHFQPIVDATTHKTVACETLL
RWQHPERGLVYPGEFIEHAEENGLITRMGEWVIRAALAEATRLPEHVRICVNISPLQVHSASLASTIVNAIAASNMDPSR
LELEITETALMSNTEFTLRRLHQLRSLGVRIALDDFGTGFSSLNHLRSFPFDRIKIDRTFVSDIETRADSQAITKSMVSL
ARSLGMQCTAEGVETSLQAEYLSKLGCEELQGYFFSHAHPLEQLGHLVQLQKASVAPPLQILEAGAQSRAS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=430, Percent_Identity=33.953488372093, Blast_Score=272, Evalue=6e-74,
Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=31.6279069767442, Blast_Score=212, Evalue=7e-56,
Organism=Escherichia coli, GI226510982, Length=419, Percent_Identity=29.1169451073986, Blast_Score=169, Evalue=8e-43,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=34.4262295081967, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI1788381, Length=530, Percent_Identity=26.2264150943396, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=35.4838709677419, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1787055, Length=273, Percent_Identity=31.8681318681319, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081845, Length=234, Percent_Identity=35.4700854700855, Blast_Score=136, Evalue=6e-33,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=33.1932773109244, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=30.5785123966942, Blast_Score=128, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=30.5439330543933, Blast_Score=123, Evalue=5e-29,
Organism=Escherichia coli, GI1788849, Length=435, Percent_Identity=25.5172413793103, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87082096, Length=236, Percent_Identity=32.2033898305085, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1787410, Length=220, Percent_Identity=26.8181818181818, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=32.8947368421053, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=29.8913043478261, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=30.635838150289, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=28.9772727272727, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=32.7380952380952, Blast_Score=74, Evalue=5e-14,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=32.5, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=31.055900621118, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 88503; Mature: 88372

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYRQDGSATLWSLRMLMQGVEVPEKHIPGLRAQQMNSMSRITNVIILSNVLNIIAILAI
CCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLNYGQTHFLYAWSVCGLIINIGAWFKYRSFLRINPQRRSNRRAIADFTRVAICNGLLWG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHCCCHHHHHHHHHHHHHHHHHH
LAPIVVLGTADVQGHMVMGIISAGMMFAGGFLLSRIPIAAIYYIVPSGLGLATALMLQTG
HHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
PKYSILSILMVYYLMVLLVAVAWTHRQFVEQYLGRAAIQEQSELIGLLLRDFEESTSDSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WQTDEAGVLQELPIVAEATDSLWSANEVLRRGAPLTSIFHPGEARDALQAALEGQVPFRD
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCCCCC
QVVPIKDGNGEMHWWSVTGKPVIERGQFFGFRGVASDVTQSKKIEDRIAHMAHYDGLTGL
CEEEEECCCCCEEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PNRITMQERLESLLRRQPPPPACRALLMMDLDSFKWVNDTLGHPAGDELLRQVAARIRAL
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHCHHHHHHCCCCCHHHHHHHHHHHHHHC
SEPGDFVARLGGDEFAMVVERRNVHDLHGFLDQFASEMSELYDVWGSTANSSASIGVRLF
CCCHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
DPAIHDSRTMFRQADLALYQAKHLGKAKWCMFDDELEQRAQARLDIQEELQRAIDRNELR
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCHHHHHHHHHCCCCEE
IHFQPIVDATTHKTVACETLLRWQHPERGLVYPGEFIEHAEENGLITRMGEWVIRAALAE
EEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
ATRLPEHVRICVNISPLQVHSASLASTIVNAIAASNMDPSRLELEITETALMSNTEFTLR
HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCHHHHH
RLHQLRSLGVRIALDDFGTGFSSLNHLRSFPFDRIKIDRTFVSDIETRADSQAITKSMVS
HHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LARSLGMQCTAEGVETSLQAEYLSKLGCEELQGYFFSHAHPLEQLGHLVQLQKASVAPPL
HHHHHCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCH
QILEAGAQSRAS
HHHHHCHHCCCC
>Mature Secondary Structure 
PYRQDGSATLWSLRMLMQGVEVPEKHIPGLRAQQMNSMSRITNVIILSNVLNIIAILAI
CCCCCCCHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLNYGQTHFLYAWSVCGLIINIGAWFKYRSFLRINPQRRSNRRAIADFTRVAICNGLLWG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHCCCHHHHHHHHHHHHHHHHHH
LAPIVVLGTADVQGHMVMGIISAGMMFAGGFLLSRIPIAAIYYIVPSGLGLATALMLQTG
HHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
PKYSILSILMVYYLMVLLVAVAWTHRQFVEQYLGRAAIQEQSELIGLLLRDFEESTSDSL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WQTDEAGVLQELPIVAEATDSLWSANEVLRRGAPLTSIFHPGEARDALQAALEGQVPFRD
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHCCCCCCCC
QVVPIKDGNGEMHWWSVTGKPVIERGQFFGFRGVASDVTQSKKIEDRIAHMAHYDGLTGL
CEEEEECCCCCEEEEEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PNRITMQERLESLLRRQPPPPACRALLMMDLDSFKWVNDTLGHPAGDELLRQVAARIRAL
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCHHCHHHHHHCCCCCHHHHHHHHHHHHHHC
SEPGDFVARLGGDEFAMVVERRNVHDLHGFLDQFASEMSELYDVWGSTANSSASIGVRLF
CCCHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
DPAIHDSRTMFRQADLALYQAKHLGKAKWCMFDDELEQRAQARLDIQEELQRAIDRNELR
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCHHHHHHHHHCCCCEE
IHFQPIVDATTHKTVACETLLRWQHPERGLVYPGEFIEHAEENGLITRMGEWVIRAALAE
EEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
ATRLPEHVRICVNISPLQVHSASLASTIVNAIAASNMDPSRLELEITETALMSNTEFTLR
HHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHCCCHHHHH
RLHQLRSLGVRIALDDFGTGFSSLNHLRSFPFDRIKIDRTFVSDIETRADSQAITKSMVS
HHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
LARSLGMQCTAEGVETSLQAEYLSKLGCEELQGYFFSHAHPLEQLGHLVQLQKASVAPPL
HHHHHCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCH
QILEAGAQSRAS
HHHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]