| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114800437
Identifier: 114800437
GI number: 114800437
Start: 2757583
End: 2759352
Strand: Direct
Name: 114800437
Synonym: HNE_2597
Alternate gene names: NA
Gene position: 2757583-2759352 (Clockwise)
Preceding gene: 114798416
Following gene: 114797567
Centisome position: 74.43
GC content: 66.16
Gene sequence:
>1770_bases ATGATCCCCGCCCGCTCGACACCTGCCGCCTTCAGCGCCGCCGCGCTCCTCCTGGCCACCCTGCTCTCCGCCTGCGCCGC CCCGGCTGAAACGCCCACGCTCGCCCCCGCCGAAGTGGCGACTCCGACGGACATGGAAATCGCCCTCACCCCCCGCCGCC CCACCGGCGACAAGGTCGAGACCATCGACGTGACGCTCACCATCCGCGAGCCTGCCCTCGCAGCGGGCGACACCTTCCTC TCCATGGCCATCGTTCGCGTCATGGCGCCAGGTGCGCTCAATCGCCCCGAAACACTGATCGCAGAAGACGCCGCCGGCCC GCTGCCCCTCACCATCGAGGAAGACCCCGTCGACCCGTCAGACTTCCGCCAGGACCGACGCTGGCTCGCCGCCCGCGCCA CGCAGGGCGACGTCACCGTCCGCTACACAATCGAGCCGCGCGTCATCACATCCGCCACCCGCCCCGGCCCGCTGATCGAC ACGCGCACAGAGCTCACCGGCTTTTACGGCTCAGGCAACACAATGCTTGCCCTTCCCGTCTCCGGTTGGCCGCGCGAGGT AGCGCTGGACTGGAACCTCGAAGACCTCACCCCCGGCGCCCGCGCTGCCTCCAGCCTCGGCGAAGGCGATGTCACCGCCA CGGTCACCGCGCAAAATCTCAACAACAGCTTCTTCTTCGCCGGCCCCCTGCGCAGCCAGCCCGAAGACGGCGCCGGCGAC TTTGCCATCTACTGGATCACCCCCGCCGCCTTCGATCTCGACGGCGCCGCCGCCTGGACCCAGGAAGCCTACGCCTATTT CAACGGCTTCTTCGGCGCCAGCGACACGCCCTTCCGCGTCTTCATGCGCACCACCGAACGCTTCCAGGGCGGCGGTGGCG GCGGCTTCAACTCCTTCATCTTCGGCACCGTCGAAGGCGAAGATCGCGACCCCGATGAAGTCCGCGGCCTTCTCGCCCAC GAGGCGCTCCACCATTTCGTTGGTGGATATGGCGATGGCGGCGGCGCGGGCGGCCAGCAATGGTATTCGGAAGGGGTGAC CAATTACTACACCGTGGTGCTGCCTTACCGCGCCGGCCTCACCAGCCTTGAACACTACATCAACGACTTCAACGGCTACG CCAAATCCTACTACACCAATCCGCAGTCGAACCTTTCCAACACCGAAGTCACCCGCCTCTTCTTTGCCGACGGAAACGCC CAGATCGTGCCCTATAATCGCGGGCCGCTCTATGTCGCCCTCACCGATGCCCGCATCCGTGCCGCGTCCGGCGGAGCGCT CCGCGTGGACAATCTCATCTTCGATTTCATTGACGCACAGAAAGGTGCCGAGGACGGCGTCGCCCTCTGGCATGATCTGG CCGAAGTCTATCTCGGCGAAGAAGGCGGCGCCGAATTCCGCGCCATGATGGAGGGCGCCCCGCTGGATCTACCCTCAGAC CTCTTCGGCCCGTGCTTTGTGGCCGAAGACCAGATGTTGCAGAACTTCGTCGTCGGGTTCCGTCCCTATAAGGATGAAGA CGGCCGCACACGGGCCGGCCCCATCGTGCCGGGCACCGCCGCCGAAGCCGCAGGCGTCGCGCGCTACGACATCATCACAA ACCCCGAAGCCCTCGAAGCAGCCGAAACCGCCGCCCCCGGCACACCGCTCACCCTGAACCTTCAGCGCGATACCGAAACC CTCAGCCGCACCTATACGCCATGGACGTCCCCCACTCCCGGCAAGCAATGGGTCCGCACGCAGGTTCCCGAAACCGACTG CAATCTCTGA
Upstream 100 bases:
>100_bases TAGATATTTCGCTGACTTCCACACGCCCCGCCCTATTCGATTAGAGTTCCCCGGGCGGCGCGCTAGTCTCTCCCTGACAC GCCCCAGAGGAGCCCGCCTT
Downstream 100 bases:
>100_bases AATCAGGTCCGGCAGTCCGGCTACCGGCGCCCCACTCCGACAATGCGTTTGGCCAAACCCCCGATGAAACGGCTACCCGC ATTCGTGGCGGTAAACACCC
Product: putative lipoprotein
Products: NA
Alternate protein names: Peptidase; Trypsin-Like Serine Protease
Number of amino acids: Translated: 589; Mature: 589
Protein sequence:
>589_residues MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVETIDVTLTIREPALAAGDTFL SMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPSDFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLID TRTELTGFYGSGNTMLALPVSGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFIFGTVEGEDRDPDEVRGLLAH EALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGLTSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNA QIVPYNRGPLYVALTDARIRAASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEAAETAAPGTPLTLNLQRDTET LSRTYTPWTSPTPGKQWVRTQVPETDCNL
Sequences:
>Translated_589_residues MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVETIDVTLTIREPALAAGDTFL SMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPSDFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLID TRTELTGFYGSGNTMLALPVSGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFIFGTVEGEDRDPDEVRGLLAH EALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGLTSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNA QIVPYNRGPLYVALTDARIRAASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEAAETAAPGTPLTLNLQRDTET LSRTYTPWTSPTPGKQWVRTQVPETDCNL >Mature_589_residues MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVETIDVTLTIREPALAAGDTFL SMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPSDFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLID TRTELTGFYGSGNTMLALPVSGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFIFGTVEGEDRDPDEVRGLLAH EALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGLTSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNA QIVPYNRGPLYVALTDARIRAASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEAAETAAPGTPLTLNLQRDTET LSRTYTPWTSPTPGKQWVRTQVPETDCNL
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63289; Mature: 63289
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVE CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCEE TIDVTLTIREPALAAGDTFLSMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPS EEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCCCHH DFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLIDTRTELTGFYGSGNTMLALPV HHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCCCCEECCHHEEEEECCCCEEEEEEC SGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD CCCCCEEEEECCHHHCCCCHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCC FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFI EEEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCEE FGTVEGEDRDPDEVRGLLAHEALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGL EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCH TSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNAQIVPYNRGPLYVALTDARIR HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEEEECCEEE AASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD ECCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHH LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEA HCCCEEECHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHCCCEEEEEECCCHHHHH AETAAPGTPLTLNLQRDTETLSRTYTPWTSPTPGKQWVRTQVPETDCNL HHHCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCC >Mature Secondary Structure MIPARSTPAAFSAAALLLATLLSACAAPAETPTLAPAEVATPTDMEIALTPRRPTGDKVE CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCEE TIDVTLTIREPALAAGDTFLSMAIVRVMAPGALNRPETLIAEDAAGPLPLTIEEDPVDPS EEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCEEEECCCCCCHH DFRQDRRWLAARATQGDVTVRYTIEPRVITSATRPGPLIDTRTELTGFYGSGNTMLALPV HHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCCCCCCEECCHHEEEEECCCCEEEEEEC SGWPREVALDWNLEDLTPGARAASSLGEGDVTATVTAQNLNNSFFFAGPLRSQPEDGAGD CCCCCEEEEECCHHHCCCCHHHHHHCCCCCEEEEEEEECCCCCEEEECCCCCCCCCCCCC FAIYWITPAAFDLDGAAAWTQEAYAYFNGFFGASDTPFRVFMRTTERFQGGGGGGFNSFI EEEEEECCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCEE FGTVEGEDRDPDEVRGLLAHEALHHFVGGYGDGGGAGGQQWYSEGVTNYYTVVLPYRAGL EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCH TSLEHYINDFNGYAKSYYTNPQSNLSNTEVTRLFFADGNAQIVPYNRGPLYVALTDARIR HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCEEEEEECCEEE AASGGALRVDNLIFDFIDAQKGAEDGVALWHDLAEVYLGEEGGAEFRAMMEGAPLDLPSD ECCCCEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCHH LFGPCFVAEDQMLQNFVVGFRPYKDEDGRTRAGPIVPGTAAEAAGVARYDIITNPEALEA HCCCEEECHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCHHHCCCEEEEEECCCHHHHH AETAAPGTPLTLNLQRDTETLSRTYTPWTSPTPGKQWVRTQVPETDCNL HHHCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA