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The map label for this gene is yxaF [H]

Identifier: 114800225

GI number: 114800225

Start: 1964922

End: 1965500

Strand: Reverse

Name: yxaF [H]

Synonym: HNE_1897

Alternate gene names: 114800225

Gene position: 1965500-1964922 (Counterclockwise)

Preceding gene: 114798609

Following gene: 114797126

Centisome position: 53.05

GC content: 65.46

Gene sequence:

>579_bases
ATGGCAGCGCAGGGAAAACATCGGGAAGCGATTCTGGCCGCCGCCGTGCGCCTTTTCCGGCAGCAAGGTTATGCAGCCAC
CGGCCTGGCCGAAATCCTGGAGGTCAGCGGCGCGCCGAAAGGCTCGCTCTATCACTACTTCCCCGGCGGCAAGCCCGAGA
TCGGCGAGAAGGCCATCACGCGCGCCGGCGAAACTGTTGCCGCCACGCTGACCGAACTCGCCGCCAGTGCGCCCAATGCC
GGAGAGCTCGTCTCCCGTTATTTCGAATTGCTGGGCGGCTGGCTGGAGCAGTCCGGCTTTCGGGATGGCAGCCCGCTGAC
AACCACCCTTCTGGAAACCGTGCCCGAGCACGAGCCCATCCGCCGCGCCGCGCTGGCGGCGTTCGAATCATGGGGAGCTA
TCTTGGAAGCGGCCGCCCAAAGAGACGGTATCTCAGCAGAGCGCAGCAAGGCCCTGGCATCGATGGCGATCATGCTGATC
GAAGGCGGCATGATCCAGTGTCGTGTCCAGCGCAGCGTCGAGCCGCTCAAGCTTGCCGCCGCCGAGGCAAAGCGCCTCTT
CGAGGCCGCGCAAACCTGA

Upstream 100 bases:

>100_bases
GCTGCTTTCCATCGCTCTTCCTCATTGTCCCTTAACGATCCGATGGATACAGTATCCAAGTAGACCGGTCTATATAATTT
TGTTCGACACGGGGGCCAGA

Downstream 100 bases:

>100_bases
TGCCGGCCTGAGTGCTCCGATGGGATGACGACACCCGGTCAAAGGTCTAAGCCGGGCCCATGGCCGTCGCCCGAATCCTC
TTCACCCTGCCACTGCCCGA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MAAQGKHREAILAAAVRLFRQQGYAATGLAEILEVSGAPKGSLYHYFPGGKPEIGEKAITRAGETVAATLTELAASAPNA
GELVSRYFELLGGWLEQSGFRDGSPLTTTLLETVPEHEPIRRAALAAFESWGAILEAAAQRDGISAERSKALASMAIMLI
EGGMIQCRVQRSVEPLKLAAAEAKRLFEAAQT

Sequences:

>Translated_192_residues
MAAQGKHREAILAAAVRLFRQQGYAATGLAEILEVSGAPKGSLYHYFPGGKPEIGEKAITRAGETVAATLTELAASAPNA
GELVSRYFELLGGWLEQSGFRDGSPLTTTLLETVPEHEPIRRAALAAFESWGAILEAAAQRDGISAERSKALASMAIMLI
EGGMIQCRVQRSVEPLKLAAAEAKRLFEAAQT
>Mature_191_residues
AAQGKHREAILAAAVRLFRQQGYAATGLAEILEVSGAPKGSLYHYFPGGKPEIGEKAITRAGETVAATLTELAASAPNAG
ELVSRYFELLGGWLEQSGFRDGSPLTTTLLETVPEHEPIRRAALAAFESWGAILEAAAQRDGISAERSKALASMAIMLIE
GGMIQCRVQRSVEPLKLAAAEAKRLFEAAQT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20379; Mature: 20247

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAQGKHREAILAAAVRLFRQQGYAATGLAEILEVSGAPKGSLYHYFPGGKPEIGEKAIT
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHH
RAGETVAATLTELAASAPNAGELVSRYFELLGGWLEQSGFRDGSPLTTTLLETVPEHEPI
HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHH
RRAALAAFESWGAILEAAAQRDGISAERSKALASMAIMLIEGGMIQCRVQRSVEPLKLAA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEHHCCCCHHHHHH
AEAKRLFEAAQT
HHHHHHHHHHCC
>Mature Secondary Structure 
AAQGKHREAILAAAVRLFRQQGYAATGLAEILEVSGAPKGSLYHYFPGGKPEIGEKAIT
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHH
RAGETVAATLTELAASAPNAGELVSRYFELLGGWLEQSGFRDGSPLTTTLLETVPEHEPI
HCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHH
RRAALAAFESWGAILEAAAQRDGISAERSKALASMAIMLIEGGMIQCRVQRSVEPLKLAA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEHHCCCCHHHHHH
AEAKRLFEAAQT
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]