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The map label for this gene is nusB

Identifier: 114800202

GI number: 114800202

Start: 2129624

End: 2130088

Strand: Reverse

Name: nusB

Synonym: HNE_2054

Alternate gene names: 114800202

Gene position: 2130088-2129624 (Counterclockwise)

Preceding gene: 114799272

Following gene: 114797343

Centisome position: 57.49

GC content: 63.66

Gene sequence:

>465_bases
ATGACCCAGGAAATGCCCTTCGACGTCACACGCGCGCGCCGCGCTGGCGCGCGCCTTGCGGCGGTTCAGGCACTCTACGA
AATGGAGCAGACGGAGAAATCCGCCCGCGCCACCATCCGCGAATTCATGGAAGACCGTCTGGGCCTCGGCCCGGATGGCA
CGCCCGTTGAAGACGCAGACCCCGACCTCTTCAAATCCATCGTAAACTCCGTGGTCGAACATCAGGCGAAGATCGACACC
GCCATCCTCGCGCGCCTCGCCGAGGGCTGGAAACTCACCCGCCTCGACGCCACCATGCGCGCCCTCCTGCGCGCCGGCGC
CGCCGAATTCATCGCCCATCAGGAACTCTCTGACGCGATCATCCTCAGCGAATACGTTTCCCTCGCCCACGACTTCTTCG
ACGAAGGCGACGCCAAATTCGCCAACGCCGTGCTGCAAAACATGGGCCGGGATTTGCGCGCTTAA

Upstream 100 bases:

>100_bases
AGGCGCTCGCCCGCGCGGATCGCAAACGCAAGAACAAGGGCGCCGAAGCGGCCAATGCCTGCCTTGCGATGATCAAATTC
CGCAAAGAGCTGATCGGTTG

Downstream 100 bases:

>100_bases
GGAGCGTTTCCTACGCCTCCCTCCACTCCATCGTCACCCTCGACCGGTGCAGCGCGTCTGAGGGCCCATCGCCAGACACC
TTCGCAGGTGCAATCGGTGA

Product: transcription antitermination factor NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MTQEMPFDVTRARRAGARLAAVQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDADPDLFKSIVNSVVEHQAKIDT
AILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGDAKFANAVLQNMGRDLRA

Sequences:

>Translated_154_residues
MTQEMPFDVTRARRAGARLAAVQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDADPDLFKSIVNSVVEHQAKIDT
AILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGDAKFANAVLQNMGRDLRA
>Mature_153_residues
TQEMPFDVTRARRAGARLAAVQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDADPDLFKSIVNSVVEHQAKIDTA
ILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAIILSEYVSLAHDFFDEGDAKFANAVLQNMGRDLRA

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NUSB_HYPNA (Q0C0J1)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_760752.1
- ProteinModelPortal:   Q0C0J1
- SMR:   Q0C0J1
- STRING:   Q0C0J1
- GeneID:   4288976
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_2054
- NMPDR:   fig|228405.5.peg.1979
- TIGR:   HNE_2054
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   AFFRDIV
- ProtClustDB:   CLSK2532120
- BioCyc:   HNEP81032:HNE_2054-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17066; Mature: 16934

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQEMPFDVTRARRAGARLAAVQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDAD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDLFKSIVNSVVEHQAKIDTAILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILSEYVSLAHDFFDEGDAKFANAVLQNMGRDLRA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQEMPFDVTRARRAGARLAAVQALYEMEQTEKSARATIREFMEDRLGLGPDGTPVEDAD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDLFKSIVNSVVEHQAKIDTAILARLAEGWKLTRLDATMRALLRAGAAEFIAHQELSDAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILSEYVSLAHDFFDEGDAKFANAVLQNMGRDLRA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA