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The map label for this gene is yfgC [H]

Identifier: 114800106

GI number: 114800106

Start: 3022411

End: 3023190

Strand: Reverse

Name: yfgC [H]

Synonym: HNE_2866

Alternate gene names: 114800106

Gene position: 3023190-3022411 (Counterclockwise)

Preceding gene: 114800065

Following gene: 114799038

Centisome position: 81.6

GC content: 63.72

Gene sequence:

>780_bases
ATGTCGCGCCGCGCGATCATCACGGGGATTGCCGCCGGTTCGGTCCTGCCATTTGTTTCCAGCTGCACCACCAATCCGGA
AACCGGCCGCAGCCAGTTTCTGCTGATGGGCGACGCGGAAGTTGCCAGCATGGCAACGGCCGCCTGGTCCGACATGAAAA
GCCAAACCCCGCAAACTTCCAATTCGGCGCTGCGCAACCGGGTTCTCAATGTCTGGAACCGCACGGCGAAAGGCGCCAAG
CGTGACCATGAGCAGTGGGATGTGGCCGTGTTTGACACCGATGATGTCAACGCCTTCGTCATGCCGGGCAACCGGGTCGG
CGTGTATCGTGGCATCACCGAACTGACCGAGAATGACGACCAGCTGTCGTCCGTGCTGGGCCATGAGGCCGGGCACGTTA
CGGGCCGTCACGCCGCCGAGCGGATGTCGGTTCAGATGGCCGCGTCAGCGGGCATGATGGCCGGGCAGATCGCGGTCGCC
TCGTCGGAGGAGCTCAGCAAGTATGGTTCAGCCATTGGCGCGCTGGGCGGCGCGGCGGTCCAGTTCGGCGTTGTTCTGCC
CTACAGCCGCAATCACGAGCTTGAGGCTGACCGGCTCGGCGTCGATTACATGCACAATGCCGGCTATGACGTGCGCCAAT
CAGTGCGCCTCTGGGAGCTGATGGACGCCCAGTCCAAAGGCCAGCGCCCGGCCGAGTTCATGTCGACCCACCCCGATCCG
ACCCGCCGCGCCGAAGAATTGCGCCAGTATATCAACGCCCGCGGCTATGCGATGATGTAG

Upstream 100 bases:

>100_bases
GGGGGAGGAGTAACCTTCACTCCGTGGTTCAGGGAGAACGAGAATGGTCGAACGCATTGATTTTGACGGCGAGATCCTGG
CGGGTGCGCCCAAGGTCCGG

Downstream 100 bases:

>100_bases
GAAGCGGCCACACCGGCCCCCTGTGAAATTGGCCCGGACGCCCAGCGTTCCGGGCTTTTTCATGCCTGCGCTTGACCGGG
AAGGGGCTTTCCGTCATATG

Product: M48 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSRRAIITGIAAGSVLPFVSSCTTNPETGRSQFLLMGDAEVASMATAAWSDMKSQTPQTSNSALRNRVLNVWNRTAKGAK
RDHEQWDVAVFDTDDVNAFVMPGNRVGVYRGITELTENDDQLSSVLGHEAGHVTGRHAAERMSVQMAASAGMMAGQIAVA
SSEELSKYGSAIGALGGAAVQFGVVLPYSRNHELEADRLGVDYMHNAGYDVRQSVRLWELMDAQSKGQRPAEFMSTHPDP
TRRAEELRQYINARGYAMM

Sequences:

>Translated_259_residues
MSRRAIITGIAAGSVLPFVSSCTTNPETGRSQFLLMGDAEVASMATAAWSDMKSQTPQTSNSALRNRVLNVWNRTAKGAK
RDHEQWDVAVFDTDDVNAFVMPGNRVGVYRGITELTENDDQLSSVLGHEAGHVTGRHAAERMSVQMAASAGMMAGQIAVA
SSEELSKYGSAIGALGGAAVQFGVVLPYSRNHELEADRLGVDYMHNAGYDVRQSVRLWELMDAQSKGQRPAEFMSTHPDP
TRRAEELRQYINARGYAMM
>Mature_258_residues
SRRAIITGIAAGSVLPFVSSCTTNPETGRSQFLLMGDAEVASMATAAWSDMKSQTPQTSNSALRNRVLNVWNRTAKGAKR
DHEQWDVAVFDTDDVNAFVMPGNRVGVYRGITELTENDDQLSSVLGHEAGHVTGRHAAERMSVQMAASAGMMAGQIAVAS
SEELSKYGSAIGALGGAAVQFGVVLPYSRNHELEADRLGVDYMHNAGYDVRQSVRLWELMDAQSKGQRPAEFMSTHPDPT
RRAEELRQYINARGYAMM

Specific function: Unknown

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI21686999, Length=252, Percent_Identity=27.7777777777778, Blast_Score=85, Evalue=7e-17,
Organism=Escherichia coli, GI1788840, Length=253, Percent_Identity=25.6916996047431, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081800, Length=220, Percent_Identity=28.6363636363636, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082185, Length=260, Percent_Identity=26.5384615384615, Blast_Score=72, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6322940, Length=270, Percent_Identity=25.1851851851852, Blast_Score=95, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 28187; Mature: 28056

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRAIITGIAAGSVLPFVSSCTTNPETGRSQFLLMGDAEVASMATAAWSDMKSQTPQTS
CCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCH
NSALRNRVLNVWNRTAKGAKRDHEQWDVAVFDTDDVNAFVMPGNRVGVYRGITELTENDD
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCEEEHHHCHHHHHCCHH
QLSSVLGHEAGHVTGRHAAERMSVQMAASAGMMAGQIAVASSEELSKYGSAIGALGGAAV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHCEEEECCHHHHHHHHHHHHHHCHHHE
QFGVVLPYSRNHELEADRLGVDYMHNAGYDVRQSVRLWELMDAQSKGQRPAEFMSTHPDP
EEEEEECCCCCCCCCHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCH
TRRAEELRQYINARGYAMM
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SRRAIITGIAAGSVLPFVSSCTTNPETGRSQFLLMGDAEVASMATAAWSDMKSQTPQTS
CCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCH
NSALRNRVLNVWNRTAKGAKRDHEQWDVAVFDTDDVNAFVMPGNRVGVYRGITELTENDD
HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCEEEHHHCHHHHHCCHH
QLSSVLGHEAGHVTGRHAAERMSVQMAASAGMMAGQIAVASSEELSKYGSAIGALGGAAV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHCEEEECCHHHHHHHHHHHHHHCHHHE
QFGVVLPYSRNHELEADRLGVDYMHNAGYDVRQSVRLWELMDAQSKGQRPAEFMSTHPDP
EEEEEECCCCCCCCCHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCH
TRRAEELRQYINARGYAMM
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]