| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114800065
Identifier: 114800065
GI number: 114800065
Start: 3024688
End: 3026091
Strand: Reverse
Name: 114800065
Synonym: HNE_2869
Alternate gene names: NA
Gene position: 3026091-3024688 (Counterclockwise)
Preceding gene: 114797875
Following gene: 114800106
Centisome position: 81.68
GC content: 66.24
Gene sequence:
>1404_bases ATGGGTGGGCTTGCCCTTCTGGCCCTGCCTTTGCTTGTCTGGTGGGGCATCTACCAATCCCCGCAGAGCGCTGTAAACCT CCAAGCGCGGCTTGAGGCGCGCGCCAAGGCGGCGCTGACAACAGGCGGCGCCGATTGGGCCAGCGTCAGCATGGAAGGCC AGCGGGCAGTGCTGACCGGGGCGGCCCCTTCCAACGATGCTGTGACCGAGGCGGCACGCCTCGTGCGGCGCAGCAGTGGG GCGGGCGGGGTCATCTTTGGCGGCGTCACGCTGGTCGAGAGCCGCGCCGATGCCGCGCCGCCCATTTCCCCTTATGTCTG GCGCGCAACCAAGACCGGCGAAGGCCGCATCGTGCTGTCTGGAAATGTGCCGTCCAAATCCATCCAGGCGAGCCTGATCG AGGATGCGCGCCTTGTGGGCCGCGCGGCGGTGGACAATGAAATGAAACTCGCCGCCGGAGCCCCGGCCGGCAACTTCCAG GGGCTGGCCCGGTTTGCGCTGAGCCAACTCGCGCAGCTGGAGGAGGGGGAGGTGACCATCACCGATCACCGCCTGGTGCT GAGAGGCGAGGTTGCCGATCCGGAGCTGCGCACGCAGATCATGGCAGCGGTGGCCGGGGTCGCGGCGCCCTTTCGGGGAG AGCCGGTTCTGTCAGGCGACATCCGCTGGCGGGCCGAGCTGTCCGGAAATGTCCTGACTTTATCGGGAACGGTGGCCGAT GAGGACGAGCGGCGTCAGCTGCTGGCGGCCGCAGAAGCGGGCTTTGACGGCGAGATTGCCGATAGGATGACACTTGGCGG ACCCGTCGCAGAAGGATGGCTCGAGGGCGCGCTGGCAGGCCTGCCCGCGTTCACGCAGTTCAGCTCCGGAGAGATGGCCT TTGATGAGGCGGCCGGCGTGTTCCTGTTTGACGGGACGGCCAGCGCCAGCACACTTTACTATCTGGCAAACGACATGGCG CGCGGCGCGGGGCGCTGGAAGACCGTCATGGGCGCCGAAATGTCCGGATTTGTCCCGGACGTGTCCGCAGATGTCTCGCC CGCAGTGGCCGGTGACGCAGTAATGCCGTGCGAGGACCAGCTTCAGGCTGCACTTGCCTCCGGCGACATCCGGTTTGCGG GCGGCGGGGCCACCATCGCCCGCGAAAGCGGCCCGCTGCTCGACAAGATTGTCGGGATCGCCCGCAACTGCGACAGAGAC ACCGGTTTTGAAATTGTCGCTGACAGCAGTGTTCAGGCCTCCGAACTGGCCGATTTTCTCACCGCAGCAGGGGTGCCGCG CGACCGCGTGGCTGCTATCACCTATGGTCCCGCCTCCGGGCAGGGGGCTAATCAGACAGTCGACACAGGCGGAGACATGC TCCGTCCTTTACAGATCAGAATTGTGGAACGGAGCGGCGAATGA
Upstream 100 bases:
>100_bases TGCGGTCTGGTAAGGGTTAGGGCATGCCTCGCCCGAGAGGGTGCTGTGGGGGTACTGGTTTTGGGAGGTCAGCGACGTGT TGCGCCTGCTTGACTACCTT
Downstream 100 bases:
>100_bases CCTGGCTTGTGGCACATATGTGGATCGCCCTGGCCGGCGCGGCGCTGGTGGCTTTGCTGCTGGGCTGGTCGCTGCGTGGC ATGCTGCTGCTGGGCAAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: OmpA/MotB Domain-Containing Protein; OmpA/MotB Domain Protein; Outer Membrane Protein
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MGGLALLALPLLVWWGIYQSPQSAVNLQARLEARAKAALTTGGADWASVSMEGQRAVLTGAAPSNDAVTEAARLVRRSSG AGGVIFGGVTLVESRADAAPPISPYVWRATKTGEGRIVLSGNVPSKSIQASLIEDARLVGRAAVDNEMKLAAGAPAGNFQ GLARFALSQLAQLEEGEVTITDHRLVLRGEVADPELRTQIMAAVAGVAAPFRGEPVLSGDIRWRAELSGNVLTLSGTVAD EDERRQLLAAAEAGFDGEIADRMTLGGPVAEGWLEGALAGLPAFTQFSSGEMAFDEAAGVFLFDGTASASTLYYLANDMA RGAGRWKTVMGAEMSGFVPDVSADVSPAVAGDAVMPCEDQLQAALASGDIRFAGGGATIARESGPLLDKIVGIARNCDRD TGFEIVADSSVQASELADFLTAAGVPRDRVAAITYGPASGQGANQTVDTGGDMLRPLQIRIVERSGE
Sequences:
>Translated_467_residues MGGLALLALPLLVWWGIYQSPQSAVNLQARLEARAKAALTTGGADWASVSMEGQRAVLTGAAPSNDAVTEAARLVRRSSG AGGVIFGGVTLVESRADAAPPISPYVWRATKTGEGRIVLSGNVPSKSIQASLIEDARLVGRAAVDNEMKLAAGAPAGNFQ GLARFALSQLAQLEEGEVTITDHRLVLRGEVADPELRTQIMAAVAGVAAPFRGEPVLSGDIRWRAELSGNVLTLSGTVAD EDERRQLLAAAEAGFDGEIADRMTLGGPVAEGWLEGALAGLPAFTQFSSGEMAFDEAAGVFLFDGTASASTLYYLANDMA RGAGRWKTVMGAEMSGFVPDVSADVSPAVAGDAVMPCEDQLQAALASGDIRFAGGGATIARESGPLLDKIVGIARNCDRD TGFEIVADSSVQASELADFLTAAGVPRDRVAAITYGPASGQGANQTVDTGGDMLRPLQIRIVERSGE >Mature_466_residues GGLALLALPLLVWWGIYQSPQSAVNLQARLEARAKAALTTGGADWASVSMEGQRAVLTGAAPSNDAVTEAARLVRRSSGA GGVIFGGVTLVESRADAAPPISPYVWRATKTGEGRIVLSGNVPSKSIQASLIEDARLVGRAAVDNEMKLAAGAPAGNFQG LARFALSQLAQLEEGEVTITDHRLVLRGEVADPELRTQIMAAVAGVAAPFRGEPVLSGDIRWRAELSGNVLTLSGTVADE DERRQLLAAAEAGFDGEIADRMTLGGPVAEGWLEGALAGLPAFTQFSSGEMAFDEAAGVFLFDGTASASTLYYLANDMAR GAGRWKTVMGAEMSGFVPDVSADVSPAVAGDAVMPCEDQLQAALASGDIRFAGGGATIARESGPLLDKIVGIARNCDRDT GFEIVADSSVQASELADFLTAAGVPRDRVAAITYGPASGQGANQTVDTGGDMLRPLQIRIVERSGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48257; Mature: 48126
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGLALLALPLLVWWGIYQSPQSAVNLQARLEARAKAALTTGGADWASVSMEGQRAVLTG CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCEEEEEC AAPSNDAVTEAARLVRRSSGAGGVIFGGVTLVESRADAAPPISPYVWRATKTGEGRIVLS CCCCCHHHHHHHHHHHHCCCCCCEEECCEEEEECCCCCCCCCCCEEEEEEECCCCEEEEE GNVPSKSIQASLIEDARLVGRAAVDNEMKLAAGAPAGNFQGLARFALSQLAQLEEGEVTI CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE TDHRLVLRGEVADPELRTQIMAAVAGVAAPFRGEPVLSGDIRWRAELSGNVLTLSGTVAD ECCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCEEEEECCCCC EDERRQLLAAAEAGFDGEIADRMTLGGPVAEGWLEGALAGLPAFTQFSSGEMAFDEAAGV CHHHHHHHHHHHCCCCCCHHHHEECCCCHHHHHHHHHHHCCCCHHCCCCCCEEHHCCCCE FLFDGTASASTLYYLANDMARGAGRWKTVMGAEMSGFVPDVSADVSPAVAGDAVMPCEDQ EEECCCCCCCEEEEHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH LQAALASGDIRFAGGGATIARESGPLLDKIVGIARNCDRDTGFEIVADSSVQASELADFL HHHHHHCCCEEEECCCCEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHH TAAGVPRDRVAAITYGPASGQGANQTVDTGGDMLRPLQIRIVERSGE HHCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC >Mature Secondary Structure GGLALLALPLLVWWGIYQSPQSAVNLQARLEARAKAALTTGGADWASVSMEGQRAVLTG CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCEEEEEC AAPSNDAVTEAARLVRRSSGAGGVIFGGVTLVESRADAAPPISPYVWRATKTGEGRIVLS CCCCCHHHHHHHHHHHHCCCCCCEEECCEEEEECCCCCCCCCCCEEEEEEECCCCEEEEE GNVPSKSIQASLIEDARLVGRAAVDNEMKLAAGAPAGNFQGLARFALSQLAQLEEGEVTI CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE TDHRLVLRGEVADPELRTQIMAAVAGVAAPFRGEPVLSGDIRWRAELSGNVLTLSGTVAD ECCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCEEEEEECCCCEEEEECCCCC EDERRQLLAAAEAGFDGEIADRMTLGGPVAEGWLEGALAGLPAFTQFSSGEMAFDEAAGV CHHHHHHHHHHHCCCCCCHHHHEECCCCHHHHHHHHHHHCCCCHHCCCCCCEEHHCCCCE FLFDGTASASTLYYLANDMARGAGRWKTVMGAEMSGFVPDVSADVSPAVAGDAVMPCEDQ EEECCCCCCCEEEEHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH LQAALASGDIRFAGGGATIARESGPLLDKIVGIARNCDRDTGFEIVADSSVQASELADFL HHHHHHCCCEEEECCCCEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHH TAAGVPRDRVAAITYGPASGQGANQTVDTGGDMLRPLQIRIVERSGE HHCCCCCHHEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA