| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114800080
Identifier: 114800080
GI number: 114800080
Start: 2734083
End: 2735192
Strand: Reverse
Name: 114800080
Synonym: HNE_2580
Alternate gene names: NA
Gene position: 2735192-2734083 (Counterclockwise)
Preceding gene: 114798956
Following gene: 114798519
Centisome position: 73.82
GC content: 62.07
Gene sequence:
>1110_bases ATGTCTGTACGAAATTTTGCGTTGGCCGCAGCGCCGGTTTTGCTTGCGCTTGTTGCCAGTTGCGCGGGGCCTGGGCTTTC GCAGGAAGCGATCTCCGCGCAGCCAGATACTGCCCCGGCAATCCCGGCTACCGAATGGGCCATGATCGAGCCGGGCGGCG ACACGCTTTGCGCCACGGGTACGCCGTTCCGGTTCCATGTGCGGGGAGGGGATATGTCCCGTGTGATGCTTTTCCTGAAT GGCGGCGGCGCCTGCTGGAGCGGCGATCATTGCGATGTGGCCACCGAGCCGACACCCTACACGCCCTTTGCTGATATGGC GTCGAATGATCCAGAGCTTTTGGAGGGCGTGTTTGACAGTGCCAACGCCGCCAACCCCTTCGCCGGTTGGACACAGTTAT TCGTACCCTATTGCACTGGCGACTCGCATCTCGGATCGAAAGATGTGGTCTACCAGACCTCGGCCGGAGAGGCGGTGACG ATCCATCACCGGGGCAAGGCCAACGTTCAGGCGGCTTTGGACTGGCTATACGCAAACCGGCCCGCGGCTCAGCGCGTTTT TGTAACCGGTGGCAGTGCCGGGGGCATTGGTTCTCCCTATTATGCCGGGCTTGTGGCAGACCAGTATCCTGAAGCGGAAA TTGTGCAGTTGGCGGATGGTTCAGGCGGCTATCGCGCGGCCGGGATCGCTGAGGTGCTGGAAACCTGGGGCGCTTTTGAG GGAACGCCCGATTGGCCGGAATTCTCTGCCCTTGATCGCGCGGCGGCCAGTACCGAAGATTTCTTCCGGGTAACGGCGGC GCGCCATCCCGAGATGCAGATGGCGCGATTTGATAATGTGGACGATCAGGTGCAGCAGGACTTCCTCGGCCTTCTGGGCA CAGGCAAGCCGGTGCGCGAATTGCTGGCGGCAAACAATGCGGATCTGGCGAGGGACATTCCCGGCATCCGGACCTTCTCG GCACCGGGAGACGGGCACACCGCGCTTCGCTTTGATCACTTCTACACAGAGCAGACAGCCGGCGTGCGGCTCTCAGACTG GGTGCGTGATCTGGCAGAGGGGCGCGCTGGCTCCAGCGTTTCCTGCGAGACGGACTCCAGCTGCGATTGA
Upstream 100 bases:
>100_bases GGTGACGCGCTGACGGCGGGCGCGACCATCGCGATTGCCAGTCTTCCTGTGCCCGCCTAAGCTTCCTCCCGATGGCCGCA GAGCCATGGGGAGGAAACAG
Downstream 100 bases:
>100_bases GCGGTCAGCTGAGACGCTGCAGCACTTTCTCGCGGCCGATGAGGGGCAGCACGGCGCTCATTTCCGGGCCGTGCTCGGCG CCGGTGAGGGCCTTGCGCAG
Product: putative lipoprotein
Products: NA
Alternate protein names: Pectinacetylesterase; Esterase; VtpJ-Therm
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MSVRNFALAAAPVLLALVASCAGPGLSQEAISAQPDTAPAIPATEWAMIEPGGDTLCATGTPFRFHVRGGDMSRVMLFLN GGGACWSGDHCDVATEPTPYTPFADMASNDPELLEGVFDSANAANPFAGWTQLFVPYCTGDSHLGSKDVVYQTSAGEAVT IHHRGKANVQAALDWLYANRPAAQRVFVTGGSAGGIGSPYYAGLVADQYPEAEIVQLADGSGGYRAAGIAEVLETWGAFE GTPDWPEFSALDRAAASTEDFFRVTAARHPEMQMARFDNVDDQVQQDFLGLLGTGKPVRELLAANNADLARDIPGIRTFS APGDGHTALRFDHFYTEQTAGVRLSDWVRDLAEGRAGSSVSCETDSSCD
Sequences:
>Translated_369_residues MSVRNFALAAAPVLLALVASCAGPGLSQEAISAQPDTAPAIPATEWAMIEPGGDTLCATGTPFRFHVRGGDMSRVMLFLN GGGACWSGDHCDVATEPTPYTPFADMASNDPELLEGVFDSANAANPFAGWTQLFVPYCTGDSHLGSKDVVYQTSAGEAVT IHHRGKANVQAALDWLYANRPAAQRVFVTGGSAGGIGSPYYAGLVADQYPEAEIVQLADGSGGYRAAGIAEVLETWGAFE GTPDWPEFSALDRAAASTEDFFRVTAARHPEMQMARFDNVDDQVQQDFLGLLGTGKPVRELLAANNADLARDIPGIRTFS APGDGHTALRFDHFYTEQTAGVRLSDWVRDLAEGRAGSSVSCETDSSCD >Mature_368_residues SVRNFALAAAPVLLALVASCAGPGLSQEAISAQPDTAPAIPATEWAMIEPGGDTLCATGTPFRFHVRGGDMSRVMLFLNG GGACWSGDHCDVATEPTPYTPFADMASNDPELLEGVFDSANAANPFAGWTQLFVPYCTGDSHLGSKDVVYQTSAGEAVTI HHRGKANVQAALDWLYANRPAAQRVFVTGGSAGGIGSPYYAGLVADQYPEAEIVQLADGSGGYRAAGIAEVLETWGAFEG TPDWPEFSALDRAAASTEDFFRVTAARHPEMQMARFDNVDDQVQQDFLGLLGTGKPVRELLAANNADLARDIPGIRTFSA PGDGHTALRFDHFYTEQTAGVRLSDWVRDLAEGRAGSSVSCETDSSCD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39006; Mature: 38875
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVRNFALAAAPVLLALVASCAGPGLSQEAISAQPDTAPAIPATEWAMIEPGGDTLCATG CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCEEEECC TPFRFHVRGGDMSRVMLFLNGGGACWSGDHCDVATEPTPYTPFADMASNDPELLEGVFDS CCEEEEECCCCCEEEEEEEECCCCEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHC ANAANPFAGWTQLFVPYCTGDSHLGSKDVVYQTSAGEAVTIHHRGKANVQAALDWLYANR CCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHCCC PAAQRVFVTGGSAGGIGSPYYAGLVADQYPEAEIVQLADGSGGYRAAGIAEVLETWGAFE CCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC GTPDWPEFSALDRAAASTEDFFRVTAARHPEMQMARFDNVDDQVQQDFLGLLGTGKPVRE CCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHH LLAANNADLARDIPGIRTFSAPGDGHTALRFDHFYTEQTAGVRLSDWVRDLAEGRAGSSV HHHCCCCCHHHCCCCCEEECCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHCCCCCCCE SCETDSSCD ECCCCCCCC >Mature Secondary Structure SVRNFALAAAPVLLALVASCAGPGLSQEAISAQPDTAPAIPATEWAMIEPGGDTLCATG CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCEEEECCCCCEEEECC TPFRFHVRGGDMSRVMLFLNGGGACWSGDHCDVATEPTPYTPFADMASNDPELLEGVFDS CCEEEEECCCCCEEEEEEEECCCCEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHC ANAANPFAGWTQLFVPYCTGDSHLGSKDVVYQTSAGEAVTIHHRGKANVQAALDWLYANR CCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHCCC PAAQRVFVTGGSAGGIGSPYYAGLVADQYPEAEIVQLADGSGGYRAAGIAEVLETWGAFE CCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC GTPDWPEFSALDRAAASTEDFFRVTAARHPEMQMARFDNVDDQVQQDFLGLLGTGKPVRE CCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHH LLAANNADLARDIPGIRTFSAPGDGHTALRFDHFYTEQTAGVRLSDWVRDLAEGRAGSSV HHHCCCCCHHHCCCCCEEECCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHCCCCCCCE SCETDSSCD ECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA