| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is yfjG [H]
Identifier: 114799654
GI number: 114799654
Start: 2096534
End: 2096995
Strand: Reverse
Name: yfjG [H]
Synonym: HNE_2020
Alternate gene names: 114799654
Gene position: 2096995-2096534 (Counterclockwise)
Preceding gene: 114800398
Following gene: 114798642
Centisome position: 56.6
GC content: 62.12
Gene sequence:
>462_bases ATGCCGCGCTTCACCAAGACCCTGCGTGTGCCTTACGGGCCGCCGCAATGCTTTGCGCTGGTGTCAGACATCGCCCGCTA TCCTGATTTCATAAAATGGATCACCGCCCTGCGCGTCTCTGAAGTGCGCGCCGCCGGCCCCGGTGTCATTGAATGCCTCG GCGAAGCGGTCGTCGGCTTCAAGGGCTTCACCGAACGCTTCACCACCCGCGTGGTCGCCGACGAACCGGCCCGCCGCGTC ACTGCCTCGCTCGTGCGCGGTCCTTTCCGCAAACTCTTTGCCGAATGGCGCATCACCGAAAGCGTCCACGGCGCCTCCGA TGTGTCGCTGGAAATCAACTACGAATTCAGAAACCCCATCATCGGCTTCCTCGCGGCTGCAAACCACGACCTGGCCGTAG ACCGTATACTGAACGCCTTTCTGGAAGAAGCGCAGCGGCGCTACTCCGCGCCCAAGGCATAA
Upstream 100 bases:
>100_bases GGCCAGCCCGCTCACGCGCTCCAGCCACCATGCGGGCGAAGACTTCGCCCAGCTGCGCGCCGCGCGCGAAGCCTTTCTCG CCGCCCGCAAAGCGTAAGGC
Downstream 100 bases:
>100_bases AGCCCCTAAATTCCTCTCCCTGTGGGAGAGGCTGCAAACGCCCGGAGCAGGCCATCGCAAAGCGATGGGAGGTGAGGGCT TCCACCCTATCCAACAAATC
Product: cyclase/dehydrase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MPRFTKTLRVPYGPPQCFALVSDIARYPDFIKWITALRVSEVRAAGPGVIECLGEAVVGFKGFTERFTTRVVADEPARRV TASLVRGPFRKLFAEWRITESVHGASDVSLEINYEFRNPIIGFLAAANHDLAVDRILNAFLEEAQRRYSAPKA
Sequences:
>Translated_153_residues MPRFTKTLRVPYGPPQCFALVSDIARYPDFIKWITALRVSEVRAAGPGVIECLGEAVVGFKGFTERFTTRVVADEPARRV TASLVRGPFRKLFAEWRITESVHGASDVSLEINYEFRNPIIGFLAAANHDLAVDRILNAFLEEAQRRYSAPKA >Mature_152_residues PRFTKTLRVPYGPPQCFALVSDIARYPDFIKWITALRVSEVRAAGPGVIECLGEAVVGFKGFTERFTTRVVADEPARRVT ASLVRGPFRKLFAEWRITESVHGASDVSLEINYEFRNPIIGFLAAANHDLAVDRILNAFLEEAQRRYSAPKA
Specific function: Unknown
COG id: COG2867
COG function: function code I; Oligoketide cyclase/lipid transport protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0083 family [H]
Homologues:
Organism=Escherichia coli, GI1788972, Length=151, Percent_Identity=30.4635761589404, Blast_Score=69, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005031 [H]
Pfam domain/function: PF03364 Polyketide_cyc [H]
EC number: NA
Molecular weight: Translated: 17142; Mature: 17011
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRFTKTLRVPYGPPQCFALVSDIARYPDFIKWITALRVSEVRAAGPGVIECLGEAVVGF CCCCCCEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH KGFTERFTTRVVADEPARRVTASLVRGPFRKLFAEWRITESVHGASDVSLEINYEFRNPI HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHCHH IGFLAAANHDLAVDRILNAFLEEAQRRYSAPKA HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PRFTKTLRVPYGPPQCFALVSDIARYPDFIKWITALRVSEVRAAGPGVIECLGEAVVGF CCCCCEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH KGFTERFTTRVVADEPARRVTASLVRGPFRKLFAEWRITESVHGASDVSLEINYEFRNPI HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEHHCHH IGFLAAANHDLAVDRILNAFLEEAQRRYSAPKA HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7524073; 9205837; 9278503 [H]