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The map label for this gene is yjfH [C]

Identifier: 114799577

GI number: 114799577

Start: 323239

End: 324048

Strand: Reverse

Name: yjfH [C]

Synonym: HNE_0328

Alternate gene names: 114799577

Gene position: 324048-323239 (Counterclockwise)

Preceding gene: 114800064

Following gene: 114798673

Centisome position: 8.75

GC content: 67.41

Gene sequence:

>810_bases
ATGCCCGAGATTATTCCCATACATGACGCCAATGATCCGCGCGTGGAGGCGTATGTCTCCATTCGCGAGCGCGATCTGAC
GGGCGGCCATGGCGGACGCTTCATCGTCGAAGGCAAGGTGACGCTGGAGACGCTGCTGGCGCGCAGCCGGTTTGAGGTGG
AGAGCCTGTTCCTGTGCGAGACGCGGCTGGCACCGCTGGCGGGGATTTTGTCAGAGGTGCCCGAAGGCGTGCCGGTATAT
GTGGCAGCGCAGGGCGTGATGGACGCAGTGGCGGGATTTCCGATGCACCGGGGCGTGCTGGCGTGTGGGCGGAAGGGCGC
TGCCCTTTCCCCTCAAAATGTTCTGCCCAAGGACGGCCCTTCAACCGCGCTGATCCTGTCGGAGCTTTCCAACCATGACA
ATGTGGGGGCGTGTTTTCGCAATGCGGCAGCGTTTGGGGCGGACGCTGTGCTGCTCGATGCGGCGTCCTGCGATCCGCTT
TACCGCAAGGCGATCCGGGTTTCTTCCGGGGCGGCGCTGTGGCTGCCCTTCAGCCAGGGCGGCACGGGGGCGGATCTGAT
TGCGGCGGCGGAGGCGGCAGGCCATGAGGTGTGGGCGCTGACCCCGCGCAGCGACGCCGCGCCCCTGCCCTCGCTGAAAG
TGCCGGAGCGGGTGGCGCTGCTGATGGGGGCCGAAGGGCCGGGCCTGCCGGCGGAGATGATCGCGCGGGCGCGGCCTGTG
CGCATTGCGATGACGGAAGGGTTTGACAGCGTGAATGTCGCCACGGCGGCGGCGATTGCGCTGGCGCATGTGTTTGCGGC
GCGGGGGTGA

Upstream 100 bases:

>100_bases
GGATGCCTATCTTGTCGAAGTGGCCAGCGGGCTGATTGCGCAGGCGATGATTGGCGTGCTGCTGGATTGATGCGGCGCCG
AAGGCAGGGCATGGGAGGCC

Downstream 100 bases:

>100_bases
CGCAAGCCTGCTCTATCCTTCAGGATGAGCTCAAACGCGGAGCGCCCCACAAGCAAGGCGCAGCGGCGCTGAGCCCGAAG
GGCTCAGCAACAGCCGCGAG

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MPEIIPIHDANDPRVEAYVSIRERDLTGGHGGRFIVEGKVTLETLLARSRFEVESLFLCETRLAPLAGILSEVPEGVPVY
VAAQGVMDAVAGFPMHRGVLACGRKGAALSPQNVLPKDGPSTALILSELSNHDNVGACFRNAAAFGADAVLLDAASCDPL
YRKAIRVSSGAALWLPFSQGGTGADLIAAAEAAGHEVWALTPRSDAAPLPSLKVPERVALLMGAEGPGLPAEMIARARPV
RIAMTEGFDSVNVATAAAIALAHVFAARG

Sequences:

>Translated_269_residues
MPEIIPIHDANDPRVEAYVSIRERDLTGGHGGRFIVEGKVTLETLLARSRFEVESLFLCETRLAPLAGILSEVPEGVPVY
VAAQGVMDAVAGFPMHRGVLACGRKGAALSPQNVLPKDGPSTALILSELSNHDNVGACFRNAAAFGADAVLLDAASCDPL
YRKAIRVSSGAALWLPFSQGGTGADLIAAAEAAGHEVWALTPRSDAAPLPSLKVPERVALLMGAEGPGLPAEMIARARPV
RIAMTEGFDSVNVATAAAIALAHVFAARG
>Mature_268_residues
PEIIPIHDANDPRVEAYVSIRERDLTGGHGGRFIVEGKVTLETLLARSRFEVESLFLCETRLAPLAGILSEVPEGVPVYV
AAQGVMDAVAGFPMHRGVLACGRKGAALSPQNVLPKDGPSTALILSELSNHDNVGACFRNAAAFGADAVLLDAASCDPLY
RKAIRVSSGAALWLPFSQGGTGADLIAAAEAAGHEVWALTPRSDAAPLPSLKVPERVALLMGAEGPGLPAEMIARARPVR
IAMTEGFDSVNVATAAAIALAHVFAARG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27959; Mature: 27828

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEIIPIHDANDPRVEAYVSIRERDLTGGHGGRFIVEGKVTLETLLARSRFEVESLFLCE
CCCEEECCCCCCCCEEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCHHHEEEHH
TRLAPLAGILSEVPEGVPVYVAAQGVMDAVAGFPMHRGVLACGRKGAALSPQNVLPKDGP
HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCHHCCHHHHCCCCCCCCCCCCCCCCCC
STALILSELSNHDNVGACFRNAAAFGADAVLLDAASCDPLYRKAIRVSSGAALWLPFSQG
CHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCC
GTGADLIAAAEAAGHEVWALTPRSDAAPLPSLKVPERVALLMGAEGPGLPAEMIARARPV
CCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHEEEEECCCCCCCCHHHHHCCCCE
RIAMTEGFDSVNVATAAAIALAHVFAARG
EEEEECCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PEIIPIHDANDPRVEAYVSIRERDLTGGHGGRFIVEGKVTLETLLARSRFEVESLFLCE
CCEEECCCCCCCCEEEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCHHHEEEHH
TRLAPLAGILSEVPEGVPVYVAAQGVMDAVAGFPMHRGVLACGRKGAALSPQNVLPKDGP
HHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCHHCCHHHHCCCCCCCCCCCCCCCCCC
STALILSELSNHDNVGACFRNAAAFGADAVLLDAASCDPLYRKAIRVSSGAALWLPFSQG
CHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCC
GTGADLIAAAEAAGHEVWALTPRSDAAPLPSLKVPERVALLMGAEGPGLPAEMIARARPV
CCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHEEEEECCCCCCCCHHHHHCCCCE
RIAMTEGFDSVNVATAAAIALAHVFAARG
EEEEECCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]