Click here to switch to the map view.

The map label for this gene is yggS [C]

Identifier: 114799476

GI number: 114799476

Start: 3687513

End: 3688181

Strand: Reverse

Name: yggS [C]

Synonym: HNE_3552

Alternate gene names: 114799476

Gene position: 3688181-3687513 (Counterclockwise)

Preceding gene: 114797859

Following gene: 114797342

Centisome position: 99.55

GC content: 61.88

Gene sequence:

>669_bases
ATGACTGATACCCTGAACCAGGACATTGCCAACCGCCGCGCCGCGATCCTTGCTGCGCTCACTGCAGCGCACGCGCCACC
GCCGGAGCTCATCGCGGTTTCCAAATTCCAGCCGGATGAGGCCATCGAGGCTGCTCTGGCCGCCGGCCAGCGTGTCTTTG
GGGAAAACCGCGTTCAGGAAGCCCAGCAACACTGGCAGGCCCGCCGCGAAACTTACGCCGACCTGACGCTGCACCTGATC
GGCCCGCTCCAGACCAACAAAGCAGCAGACGCCGTTCGCCTGTTCGATGTCATTCAAACGCTCGACCGCGAAAAACTCGC
GGACGCCCTGGCCGCCGCCATGGAGAAGGAAGGCCGTCGTCCAAAGATGTTGATCCAGGTCAATACGGGCGAAGAAGATC
AGAAAGCCGGCGTTTTCCCGTCCAAGGTGGGCGCATTGCTACGTTACGCGCGCGAAAGCGCCAATCTTGAGGTCGATGGC
CTCATGTGTATTCCGCCGGTCGATGAACCGGCCGGTCCCCATTTTGCGCTCCTGAAGAAGATCGCGAAGGATTACGGCCT
GCCCGTCCTGTCCATGGGCATGAGCGGTGATTACGAGCTCGCCGCCCGCTATGGCGCAACCCATGTCCGCGTCGGAACCG
CCTTCTTTGGCGAGCGAAACACAGGCTAG

Upstream 100 bases:

>100_bases
AAACGCCGGTGGCAGGCCCGCTGGCAAATGCCGGGCTGCCACGCGCGCGGCCATCCGCGCCTTGCGCCTTGATGCGTATT
GGGCTTTCTCGCTCATCAAG

Downstream 100 bases:

>100_bases
ACCCGGATTTCGATCGCCGAACGGCCCGTCAGACGCGTTACCACCTCCCGAAGGTCACCATCTGTCAGCGCGATGCAGCC
CTCCGTCGGCAAATAGCCCG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTDTLNQDIANRRAAILAALTAAHAPPPELIAVSKFQPDEAIEAALAAGQRVFGENRVQEAQQHWQARRETYADLTLHLI
GPLQTNKAADAVRLFDVIQTLDREKLADALAAAMEKEGRRPKMLIQVNTGEEDQKAGVFPSKVGALLRYARESANLEVDG
LMCIPPVDEPAGPHFALLKKIAKDYGLPVLSMGMSGDYELAARYGATHVRVGTAFFGERNTG

Sequences:

>Translated_222_residues
MTDTLNQDIANRRAAILAALTAAHAPPPELIAVSKFQPDEAIEAALAAGQRVFGENRVQEAQQHWQARRETYADLTLHLI
GPLQTNKAADAVRLFDVIQTLDREKLADALAAAMEKEGRRPKMLIQVNTGEEDQKAGVFPSKVGALLRYARESANLEVDG
LMCIPPVDEPAGPHFALLKKIAKDYGLPVLSMGMSGDYELAARYGATHVRVGTAFFGERNTG
>Mature_221_residues
TDTLNQDIANRRAAILAALTAAHAPPPELIAVSKFQPDEAIEAALAAGQRVFGENRVQEAQQHWQARRETYADLTLHLIG
PLQTNKAADAVRLFDVIQTLDREKLADALAAAMEKEGRRPKMLIQVNTGEEDQKAGVFPSKVGALLRYARESANLEVDGL
MCIPPVDEPAGPHFALLKKIAKDYGLPVLSMGMSGDYELAARYGATHVRVGTAFFGERNTG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=213, Percent_Identity=35.2112676056338, Blast_Score=111, Evalue=4e-25,
Organism=Escherichia coli, GI1789321, Length=231, Percent_Identity=35.9307359307359, Blast_Score=113, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17533025, Length=236, Percent_Identity=32.6271186440678, Blast_Score=104, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6319435, Length=208, Percent_Identity=33.6538461538462, Blast_Score=87, Evalue=1e-18,
Organism=Drosophila melanogaster, GI45550861, Length=215, Percent_Identity=37.2093023255814, Blast_Score=107, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24116; Mature: 23985

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTLNQDIANRRAAILAALTAAHAPPPELIAVSKFQPDEAIEAALAAGQRVFGENRVQE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AQQHWQARRETYADLTLHLIGPLQTNKAADAVRLFDVIQTLDREKLADALAAAMEKEGRR
HHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PKMLIQVNTGEEDQKAGVFPSKVGALLRYARESANLEVDGLMCIPPVDEPAGPHFALLKK
CEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHCCEEECCEEEECCCCCCCCCHHHHHHH
IAKDYGLPVLSMGMSGDYELAARYGATHVRVGTAFFGERNTG
HHHHHCCCEEECCCCCCHHHHHHCCCCEEEECHHCCCCCCCC
>Mature Secondary Structure 
TDTLNQDIANRRAAILAALTAAHAPPPELIAVSKFQPDEAIEAALAAGQRVFGENRVQE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AQQHWQARRETYADLTLHLIGPLQTNKAADAVRLFDVIQTLDREKLADALAAAMEKEGRR
HHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PKMLIQVNTGEEDQKAGVFPSKVGALLRYARESANLEVDGLMCIPPVDEPAGPHFALLKK
CEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHCCEEECCEEEECCCCCCCCCHHHHHHH
IAKDYGLPVLSMGMSGDYELAARYGATHVRVGTAFFGERNTG
HHHHHCCCEEECCCCCCHHHHHHCCCCEEEECHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]