BacMap

Definition	Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession	NC_008358
Length	3,705,021

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The map label for this gene is rfbB [H]

Identifier: 114799437

GI number: 114799437

Start: 809312

End: 810565

Strand: Direct

Name: rfbB [H]

Synonym: HNE_0796

Alternate gene names: 114799437

Gene position: 809312-810565 (Clockwise)

Preceding gene: 114800250

Following gene: 114798665

Centisome position: 21.84

GC content: 50.64

Gene sequence:

>1254_bases
ATGACAGCTCCGGATGTGGTCCTGCGAATTGAAAATGTGTCCAAACACTATAGGTCCTACAAATCCAGCGCTGGCCGAAT
TGGCGGCTGGCTGGGCATGTCGCGCACGCCCGCTAGTCACGGTGTAGCGCTCGACTCAATAAACCTGTCCTTGCACCGGG
GCGAGGCTATCGCACTGATCGGTCAAAATGGCGCGGGCAAAAGCACGCTGCTAAAGATAATCACCGGTACGGTTCGCCCA
ACAGTGGGCGCTGTGCATGTTGGTGGTCGCATCAGTGCGATCCTAGAGCTTGGCCTGGGGTTTAATCCAGAATTCTCCGG
CCGCGAGAATATAATGAACTCTGGCGGGCTGCTTGGCTTCACGTCGAGCCAGCTCCGGGAACTGATGCCGGAAATTGAGT
CATTCGCTGAGATTGGTCCCTATTTCGATGCGCCGGTGCGGACCTATTCCAGCGGGATGCAAGCACGTTTGGCGTTTGCG
CTTGCGACCGCAGTTCGTCCTGAAATCCTCATTGTCGATGAGGTGCTCTCAGTCGGTGACGCTTATTTTCAGCATAAAAG
TTTCGCCCGGATTAGACAATTCCGGGATGCCGGTACGACACTCATTCTAGTCTCGCACAGCCTCGGTGATGTGCGTGAGT
TGTGCAATCGAGTCGTTCTTATTGATAAGGGGCGCATCCTTCGCGATGGCCTACCGGATGAAGTTATAGATTATTACAAT
GGCATGATTGCCGAGCGCGAGAATGCTAAGCTCAGCATAGAGCAAAGACGCAGCAGTCAAGGGTGGAGTGTTACTCGCTC
AGGTGATTTTCGAGCGGTTGTCACTGACATATCACTTTATTCGGCTGAAAGCGGCGATGAAGTCACGACTGCGCGAACAG
GAGAGATGCTTCAGCTAAAGGTAAATGTTCAGATCAATGATGATTTACCGACACTAGTGTTTGGTCTGATGATTAGAGAT
CGAACTGGGCATGTTGTTTGGGGTAGTAATACTTGGCACACACGGCAGGTTTTGTCGGATATCAAGTGTGGTTCTAACCT
ATCCTTCACGCTCGATTTCCCTTGTATATTGGGTCCGGGCTCGTATTCAATTTCGCCCGCGTTGGTGAACTCAGACACCC
ATCTCGATCAAAATTTCGAATGGACCGACAACCTATTTGTATTCAACGTAATTAATGCGGACAAGGATTACTTTGTGGGA
ACCACGCTACTCGATGCGAAATTCGGAGTAGAGTATATCAGTAAAATACAATGA

Upstream 100 bases:

>100_bases
AGTGGCAGACACTGCTGTATCCGCTGATTGCCGGAGTGCTGTTCAGTGCCCTGTCTCTTTTCATTTTCAGGCGGGCAAGC
TCCGAACTGGTGGACGCACT

Downstream 100 bases:

>100_bases
TTTCACATGCTCAACAGTTTGAAGATATAATACTTTGGCGTGCGTTCAAGGACGTGCTGAACGGCACTTATATAGATATT
GGCGCCAACGATCCAATCGT

Product: lipopolysaccharide ABC transporter ATP-binding protein

Products: ADP; phosphate; L-glutamine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MTAPDVVLRIENVSKHYRSYKSSAGRIGGWLGMSRTPASHGVALDSINLSLHRGEAIALIGQNGAGKSTLLKIITGTVRP
TVGAVHVGGRISAILELGLGFNPEFSGRENIMNSGGLLGFTSSQLRELMPEIESFAEIGPYFDAPVRTYSSGMQARLAFA
LATAVRPEILIVDEVLSVGDAYFQHKSFARIRQFRDAGTTLILVSHSLGDVRELCNRVVLIDKGRILRDGLPDEVIDYYN
GMIAERENAKLSIEQRRSSQGWSVTRSGDFRAVVTDISLYSAESGDEVTTARTGEMLQLKVNVQINDDLPTLVFGLMIRD
RTGHVVWGSNTWHTRQVLSDIKCGSNLSFTLDFPCILGPGSYSISPALVNSDTHLDQNFEWTDNLFVFNVINADKDYFVG
TTLLDAKFGVEYISKIQ

Sequences:

>Translated_417_residues
MTAPDVVLRIENVSKHYRSYKSSAGRIGGWLGMSRTPASHGVALDSINLSLHRGEAIALIGQNGAGKSTLLKIITGTVRP
TVGAVHVGGRISAILELGLGFNPEFSGRENIMNSGGLLGFTSSQLRELMPEIESFAEIGPYFDAPVRTYSSGMQARLAFA
LATAVRPEILIVDEVLSVGDAYFQHKSFARIRQFRDAGTTLILVSHSLGDVRELCNRVVLIDKGRILRDGLPDEVIDYYN
GMIAERENAKLSIEQRRSSQGWSVTRSGDFRAVVTDISLYSAESGDEVTTARTGEMLQLKVNVQINDDLPTLVFGLMIRD
RTGHVVWGSNTWHTRQVLSDIKCGSNLSFTLDFPCILGPGSYSISPALVNSDTHLDQNFEWTDNLFVFNVINADKDYFVG
TTLLDAKFGVEYISKIQ
>Mature_416_residues
TAPDVVLRIENVSKHYRSYKSSAGRIGGWLGMSRTPASHGVALDSINLSLHRGEAIALIGQNGAGKSTLLKIITGTVRPT
VGAVHVGGRISAILELGLGFNPEFSGRENIMNSGGLLGFTSSQLRELMPEIESFAEIGPYFDAPVRTYSSGMQARLAFAL
ATAVRPEILIVDEVLSVGDAYFQHKSFARIRQFRDAGTTLILVSHSLGDVRELCNRVVLIDKGRILRDGLPDEVIDYYNG
MIAERENAKLSIEQRRSSQGWSVTRSGDFRAVVTDISLYSAESGDEVTTARTGEMLQLKVNVQINDDLPTLVFGLMIRDR
TGHVVWGSNTWHTRQVLSDIKCGSNLSFTLDFPCILGPGSYSISPALVNSDTHLDQNFEWTDNLFVFNVINADKDYFVGT
TLLDAKFGVEYISKIQ

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=244, Percent_Identity=26.2295081967213, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI116734710, Length=205, Percent_Identity=27.8048780487805, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI27262624, Length=198, Percent_Identity=26.2626262626263, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI27262626, Length=198, Percent_Identity=26.2626262626263, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI6005701, Length=214, Percent_Identity=25.2336448598131, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI27477115, Length=193, Percent_Identity=26.9430051813472, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI45446740, Length=233, Percent_Identity=29.1845493562232, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI47078218, Length=233, Percent_Identity=29.1845493562232, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI105990541, Length=265, Percent_Identity=26.0377358490566, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI27436953, Length=191, Percent_Identity=25.6544502617801, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI150417984, Length=267, Percent_Identity=26.2172284644195, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI153792144, Length=246, Percent_Identity=22.3577235772358, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI30795238, Length=197, Percent_Identity=23.8578680203046, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI27881501, Length=197, Percent_Identity=23.8578680203046, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI21536376, Length=201, Percent_Identity=27.363184079602, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI1787029, Length=212, Percent_Identity=30.188679245283, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081709, Length=203, Percent_Identity=26.1083743842365, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1786319, Length=198, Percent_Identity=29.7979797979798, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788225, Length=217, Percent_Identity=29.4930875576037, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI48995001, Length=202, Percent_Identity=31.1881188118812, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787758, Length=241, Percent_Identity=25.3112033195021, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790467, Length=203, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081791, Length=207, Percent_Identity=21.7391304347826, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081782, Length=219, Percent_Identity=25.5707762557078, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787089, Length=207, Percent_Identity=26.5700483091787, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787547, Length=260, Percent_Identity=24.2307692307692, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI48994943, Length=230, Percent_Identity=24.3478260869565, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786398, Length=225, Percent_Identity=24.8888888888889, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788210, Length=210, Percent_Identity=30.4761904761905, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787370, Length=288, Percent_Identity=23.6111111111111, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1790525, Length=215, Percent_Identity=25.1162790697674, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789032, Length=256, Percent_Identity=23.046875, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787792, Length=208, Percent_Identity=28.3653846153846, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=28.0952380952381, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788450, Length=208, Percent_Identity=28.3653846153846, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI48994997, Length=221, Percent_Identity=24.4343891402715, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788165, Length=243, Percent_Identity=27.1604938271605, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1787712, Length=195, Percent_Identity=24.1025641025641, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=26.3414634146341, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1789962, Length=216, Percent_Identity=23.1481481481481, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789751, Length=202, Percent_Identity=27.2277227722772, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789593, Length=211, Percent_Identity=24.1706161137441, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=199, Percent_Identity=26.6331658291457, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71983510, Length=206, Percent_Identity=26.6990291262136, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=206, Percent_Identity=26.6990291262136, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=206, Percent_Identity=26.6990291262136, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=195, Percent_Identity=25.6410256410256, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=198, Percent_Identity=26.2626262626263, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=221, Percent_Identity=26.2443438914027, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007184, Length=240, Percent_Identity=27.0833333333333, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI221500365, Length=240, Percent_Identity=27.0833333333333, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643674, Length=316, Percent_Identity=25.3164556962025, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28573571, Length=200, Percent_Identity=25.5, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI28573573, Length=200, Percent_Identity=25.5, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24650853, Length=284, Percent_Identity=26.7605633802817, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650855, Length=284, Percent_Identity=27.112676056338, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281362751, Length=222, Percent_Identity=27.027027027027, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582014, Length=232, Percent_Identity=26.2931034482759, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24582012, Length=232, Percent_Identity=26.2931034482759, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221512771, Length=232, Percent_Identity=25.4310344827586, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28574259, Length=230, Percent_Identity=27.8260869565217, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI28574150, Length=202, Percent_Identity=23.2673267326733, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007328, Length=202, Percent_Identity=23.2673267326733, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85725262, Length=247, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24666092, Length=210, Percent_Identity=23.8095238095238, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 45741; Mature: 45609

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPDVVLRIENVSKHYRSYKSSAGRIGGWLGMSRTPASHGVALDSINLSLHRGEAIALI
CCCCCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEEEEEEECCCEEEEE
GQNGAGKSTLLKIITGTVRPTVGAVHVGGRISAILELGLGFNPEFSGRENIMNSGGLLGF
ECCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEE
TSSQLRELMPEIESFAEIGPYFDAPVRTYSSGMQARLAFALATAVRPEILIVDEVLSVGD
CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEHHHHHHHHH
AYFQHKSFARIRQFRDAGTTLILVSHSLGDVRELCNRVVLIDKGRILRDGLPDEVIDYYN
HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCEEEEECCCHHHCCCCHHHHHHHC
GMIAERENAKLSIEQRRSSQGWSVTRSGDFRAVVTDISLYSAESGDEVTTARTGEMLQLK
CEEEECCCCEEEHHHHCCCCCCEEEECCCCEEEEEEEEEEECCCCCCEEEECCCCEEEEE
VNVQINDDLPTLVFGLMIRDRTGHVVWGSNTWHTRQVLSDIKCGSNLSFTLDFPCILGPG
EEEEECCCCHHHHHHHHEECCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCEEECCC
SYSISPALVNSDTHLDQNFEWTDNLFVFNVINADKDYFVGTTLLDAKFGVEYISKIQ
CCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHCC
>Mature Secondary Structure 
TAPDVVLRIENVSKHYRSYKSSAGRIGGWLGMSRTPASHGVALDSINLSLHRGEAIALI
CCCCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEEEEEEECCCEEEEE
GQNGAGKSTLLKIITGTVRPTVGAVHVGGRISAILELGLGFNPEFSGRENIMNSGGLLGF
ECCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHCCCCEEEE
TSSQLRELMPEIESFAEIGPYFDAPVRTYSSGMQARLAFALATAVRPEILIVDEVLSVGD
CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCEEEHHHHHHHHH
AYFQHKSFARIRQFRDAGTTLILVSHSLGDVRELCNRVVLIDKGRILRDGLPDEVIDYYN
HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCEEEEECCCHHHCCCCHHHHHHHC
GMIAERENAKLSIEQRRSSQGWSVTRSGDFRAVVTDISLYSAESGDEVTTARTGEMLQLK
CEEEECCCCEEEHHHHCCCCCCEEEECCCCEEEEEEEEEEECCCCCCEEEECCCCEEEEE
VNVQINDDLPTLVFGLMIRDRTGHVVWGSNTWHTRQVLSDIKCGSNLSFTLDFPCILGPG
EEEEECCCCHHHHHHHHEECCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCEEECCC
SYSISPALVNSDTHLDQNFEWTDNLFVFNVINADKDYFVGTTLLDAKFGVEYISKIQ
CCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-glutamine [Periplasm]; H2O [C]

Specific reaction: ATP + L-glutamine [Periplasm] + H2O = ADP + phosphate + L-glutamine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]