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The map label for this gene is rfbA [H]

Identifier: 114800250

GI number: 114800250

Start: 808521

End: 809315

Strand: Direct

Name: rfbA [H]

Synonym: HNE_0795

Alternate gene names: 114800250

Gene position: 808521-809315 (Clockwise)

Preceding gene: 114797456

Following gene: 114799437

Centisome position: 21.82

GC content: 52.58

Gene sequence:

>795_bases
TTGGAGCAACAGATTCAGTCGGCTTGGAACTATCGGCATTTCATCCTGGCGGCCATCCGAGCAGAGTTCAAGGGACGAGT
CGCGCGATCAAAGATAGGTGCGCTGTGGTTTGTTCTGCATCCTCTGGCCATCGCCCTGATCTACGCTCTTGTTTTGTCGG
AAGTGCTGAGCGCGAAATTGGCGGGCACTGAGCGAGAAGGCGCTTACGGGATTTATCTTCTTGCCGGGATCTCAGTTTGG
ACGATTTTCTCGGAAGTGACCAATCGATGCCTGAACATATTCATCGAATACTCCAGCGCCATCAAGAAAATAAACTTTCC
GAAGATTGCGCTACCGTTGATCGTGCTCGGCGGCGCGCTTTTTTCACACCTCTTACTATTGAGCGCGGTTGGCCTAATTG
CGTCTTTCTACGGGTTCTCGATACAATTGGCCTGGCTTTACTTGCCGATCCCTTTGGTGCTCGCTTGCCTTATGGCGGGA
GGATTAGGGGTCTGCTTGGGCGTGCTGAACGTGTTTTCGAGAGACGTGTCGCATGTAATGTCAGTCGCGATGAATATGTG
GTTCTGGCTAACGCCGATTGTTTACGCAACCAACATGCTGCCTGAATATATGCAGAGTTTTATAGCGCTTAACCCTATGA
CCGGGGTCGTTGCGGCGTATCAGGACATCATCGTGTTTGGCCGCGCGCCCGAGTGGCAGACACTGCTGTATCCGCTGATT
GCCGGAGTGCTGTTCAGTGCCCTGTCTCTTTTCATTTTCAGGCGGGCAAGCTCCGAACTGGTGGACGCACTATGA

Upstream 100 bases:

>100_bases
AGTGCGGGTGCCAAAATTTCCGGCTGCACCTAGACGTTGGTTTGGAACGTTGGGAAATTTTCGGTCGTTTTCTTCCAGAG
TCGGTTAGAGAGGTAGCAAG

Downstream 100 bases:

>100_bases
CAGCTCCGGATGTGGTCCTGCGAATTGAAAATGTGTCCAAACACTATAGGTCCTACAAATCCAGCGCTGGCCGAATTGGC
GGCTGGCTGGGCATGTCGCG

Product: lipopolysaccharide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MEQQIQSAWNYRHFILAAIRAEFKGRVARSKIGALWFVLHPLAIALIYALVLSEVLSAKLAGTEREGAYGIYLLAGISVW
TIFSEVTNRCLNIFIEYSSAIKKINFPKIALPLIVLGGALFSHLLLLSAVGLIASFYGFSIQLAWLYLPIPLVLACLMAG
GLGVCLGVLNVFSRDVSHVMSVAMNMWFWLTPIVYATNMLPEYMQSFIALNPMTGVVAAYQDIIVFGRAPEWQTLLYPLI
AGVLFSALSLFIFRRASSELVDAL

Sequences:

>Translated_264_residues
MEQQIQSAWNYRHFILAAIRAEFKGRVARSKIGALWFVLHPLAIALIYALVLSEVLSAKLAGTEREGAYGIYLLAGISVW
TIFSEVTNRCLNIFIEYSSAIKKINFPKIALPLIVLGGALFSHLLLLSAVGLIASFYGFSIQLAWLYLPIPLVLACLMAG
GLGVCLGVLNVFSRDVSHVMSVAMNMWFWLTPIVYATNMLPEYMQSFIALNPMTGVVAAYQDIIVFGRAPEWQTLLYPLI
AGVLFSALSLFIFRRASSELVDAL
>Mature_264_residues
MEQQIQSAWNYRHFILAAIRAEFKGRVARSKIGALWFVLHPLAIALIYALVLSEVLSAKLAGTEREGAYGIYLLAGISVW
TIFSEVTNRCLNIFIEYSSAIKKINFPKIALPLIVLGGALFSHLLLLSAVGLIASFYGFSIQLAWLYLPIPLVLACLMAG
GLGVCLGVLNVFSRDVSHVMSVAMNMWFWLTPIVYATNMLPEYMQSFIALNPMTGVVAAYQDIIVFGRAPEWQTLLYPLI
AGVLFSALSLFIFRRASSELVDAL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29187; Mature: 29187

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]