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The map label for this gene is vanR [H]

Identifier: 114799307

GI number: 114799307

Start: 1145575

End: 1146339

Strand: Direct

Name: vanR [H]

Synonym: HNE_1135

Alternate gene names: 114799307

Gene position: 1145575-1146339 (Clockwise)

Preceding gene: 114799701

Following gene: 114798662

Centisome position: 30.92

GC content: 63.92

Gene sequence:

>765_bases
ATGGACAGTGCTGGTCCGCAGGATACCTTCAGCGAGGTAATGGATCTCGCCCGCCGGATCGACGCGGTGGGCCGCGAAAC
CGGCCTGCCTTACGTCGCGGTCAGCGCTGATCTCAGCGATCCATCGCCGATGATCGGCGCCGATGGGCGGCCGCTGGCGG
AGACGGTTTTCCGCTGGGTCGATCCGGGGCTCGCCTACTGGAAAGATCGTGCTTTTGCGCTGCGGGCGGGGATTATTCGC
GTCGTCCGGGTGTGTGGAGAGCCGTTCTGTTATCATGGGGGCAAGATGCACAGCTGGCGCCAGGTGCGCGCGCTGGAAGC
GGTCAACCGCAAGATCGATCCGGAGGCTTACGGGTCCTATGGCGTGCAGGGGGCGATCGTTGCGCCGATCCATTCGCCGA
TGGGGGTGATCGGCGCGGTCGTCTGGGCGACGGATGACGAAGCCGTTGATGTGTCAGGGATTTTTGAGGCGCGGGGCGCG
GAGCTTTACATGCTCGCGCTGAAATTCCTGTCGGCTTACAAAGACGCGGTGTTGCCGTCGGCGGACCCGGAAATGGTGGA
ATTCACCCGCCGGGAAATCCAGTGCCTTAAATGGGCGGCGGCGGGGAAAACCGATTCCGAAATCGCCACGATCATGGGCG
TTTCAGCCCCCACCATCCGCTTTCACATGACCAATGCCAGCCGCAAGCTGGGCGTTTCGGGCCGCTCTCAGACGATCCGT
CTGGCCACCACGCTGGGCTATATCGGGCAGGGCGGCGGGGCCTGA

Upstream 100 bases:

>100_bases
CATGGTCGCGCCTCCCGGCTTATTATCTCTGGCTTCCCTCATGACAGAGCAAGCAAGACAGCATGGGGCAAGCTGACGGA
ATTGATAGGGCTCGCCAAAA

Downstream 100 bases:

>100_bases
AAAGCCTCCAAAAAAACTCCAACGCCGTTGGAGTTTTTCAGGCGCCCGCGCGCGCCTTGAAGGTGGCGAGCAATTCCTGC
GCGAAGACGGTGAGGGTATC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MDSAGPQDTFSEVMDLARRIDAVGRETGLPYVAVSADLSDPSPMIGADGRPLAETVFRWVDPGLAYWKDRAFALRAGIIR
VVRVCGEPFCYHGGKMHSWRQVRALEAVNRKIDPEAYGSYGVQGAIVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGA
ELYMLALKFLSAYKDAVLPSADPEMVEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIR
LATTLGYIGQGGGA

Sequences:

>Translated_254_residues
MDSAGPQDTFSEVMDLARRIDAVGRETGLPYVAVSADLSDPSPMIGADGRPLAETVFRWVDPGLAYWKDRAFALRAGIIR
VVRVCGEPFCYHGGKMHSWRQVRALEAVNRKIDPEAYGSYGVQGAIVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGA
ELYMLALKFLSAYKDAVLPSADPEMVEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIR
LATTLGYIGQGGGA
>Mature_254_residues
MDSAGPQDTFSEVMDLARRIDAVGRETGLPYVAVSADLSDPSPMIGADGRPLAETVFRWVDPGLAYWKDRAFALRAGIIR
VVRVCGEPFCYHGGKMHSWRQVRALEAVNRKIDPEAYGSYGVQGAIVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGA
ELYMLALKFLSAYKDAVLPSADPEMVEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIR
LATTLGYIGQGGGA

Specific function: Probable transcriptional activator. Binds to autoinducer molecule ODHL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27368; Mature: 27368

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSAGPQDTFSEVMDLARRIDAVGRETGLPYVAVSADLSDPSPMIGADGRPLAETVFRWV
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
DPGLAYWKDRAFALRAGIIRVVRVCGEPFCYHGGKMHSWRQVRALEAVNRKIDPEAYGSY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCC
GVQGAIVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGAELYMLALKFLSAYKDAVLPS
CCCCEEEECCCCCHHHHHEEEEECCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
ADPEMVEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIR
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEE
LATTLGYIGQGGGA
EEEHHHHCCCCCCC
>Mature Secondary Structure
MDSAGPQDTFSEVMDLARRIDAVGRETGLPYVAVSADLSDPSPMIGADGRPLAETVFRWV
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
DPGLAYWKDRAFALRAGIIRVVRVCGEPFCYHGGKMHSWRQVRALEAVNRKIDPEAYGSY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCC
GVQGAIVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGAELYMLALKFLSAYKDAVLPS
CCCCEEEECCCCCHHHHHEEEEECCCCCEEHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
ADPEMVEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIR
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEE
LATTLGYIGQGGGA
EEEHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139920 [H]