| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114799275
Identifier: 114799275
GI number: 114799275
Start: 451215
End: 452753
Strand: Reverse
Name: 114799275
Synonym: HNE_0457
Alternate gene names: NA
Gene position: 452753-451215 (Counterclockwise)
Preceding gene: 114798549
Following gene: 114800491
Centisome position: 12.22
GC content: 61.27
Gene sequence:
>1539_bases ATGATGCGCCTTTGCCGCCCAGTTACCCGTCTTCCCGCGCTGCGAAGCGCCGAGGGCGGGAATGTGGCGATGATTACGGC CTTCGTGATCCCCTGCATTCTGGCGCTGACGGGCATCGCCATCGATCTGCAAAATACGGTGCGCCAGAAATCCAAGGTGC AGGCAGCGCTCGACTCGGCCGTGCTGGCCGGCGCGCTGGGGCGGCAGGCGGGCAACACGGCCGCTGAAACCACGCTGGAC GTGCAGACCTATGCGCTGGCGCTGTTCACAGATCAGGGCGGCGGGCTGGACTGTGATCCGGTGGCCGTGACCTTCGACGA GACCAATCTCGACATTCTCGGAACCGTCCGCTGCCGCCAGCCGACCTATCTTTCCAGCCTGATCGGGCATGATGAGCTTG AGTTCAATGTGGCGTCCACCTCGACCTATGGGGTGGGCAAGCTGGACGTTGCATTCATATTCGACGTGTCCGGATCAATG AACAGCTATAACCGGCTGGCGCAGCTGAAAACGGCGGCCGTTGCAGCCGTTGACGAGTTGCTGCCCGACAGCCGGGAGCG GGACGGAACGGTGCGCCTGGCGATTGCCAGCTATAATCATTCGCTGAATGCGGGCGCCTATATCGGCGCCGTGACCGAGA CGGTGACACTCTCTGCCGACGGATCAAATTCCACGGCACTGAGCCGGTATAACAGCCACAATACCAAACGCATGATTGAC CAGGACAGCGGCAAGCGCTTTTTCTACTATCAGAGCGGCACCTGTTCGAGCTGGAACTGCGGTAAGTATTCAAGCTGGAG CTGGGATACCAAGCGCCGGTTTTTTGACGATACGGGGCTGGCAGACGCGTGCGTATATGAGCGCACGGGAACGCAGGCAG CAACCGACGCCGCGCCCGGCAGCGGAGCCTGGATCGGGGCGGGCAATCCGCGCTGGAGTTTCTATGCCGGCAGCTCCAGC AAGTATGATGGCTGGCAGAATGTCGAAAATCAGAACGCAACGGGTTATGGTGTGGGCGCCTATGAAGGCCGCCACGGCAC CTGCATGCCGTCTGGCCCGGTGCCGCTGACCGAAGACAAGACGGTGCTGAAGGATCATGTGAACGCGCTGGTCGCCGAAG GTGGCACCGCAGGCCATCTGGGCATCGCCTGGGGCTGGTATCTGGTATCGCCCGAATGGGCTGCCATCTGGCCCGAAGCG TCCGAGCCCCTGCCCTATCGCCAGCCGCAGACGTCCAAGGCCGTCATCCTTATGACGGACGGGGATTTCAATATCGAGCA TCCGACAGCTTCGCGGGACTCCTTCCGACAGTCGATGGATCTGTGCGACGGGATGAAAGCTTCGAGCCGGCGTATCCAGA TTTATACGGTAGGCTTTCAGGTGCCTTCGAGTGTTCAGCGCACGGGCGACGGGCGCACCATCCTGGAATATTGCGCGACT TCTCCCTCCCATGCCTTCAGCGCTGACAGCGGGGAGGAGCTGATCGAGGTGTATCGCTCGATTGCCCGCTCAATTTCCGA TCTTCGCCTGAAGGAGTGA
Upstream 100 bases:
>100_bases GACCGAAGCCTACAAGTCCATCGCCCGCTCCATCTCCGATCTGCGGATTTCGCGCTGACCGGATTTTGCAAAGCCCTTCT GCCTAGAGAGCAGTGAGACA
Downstream 100 bases:
>100_bases GCGCCGCCATTGCGGCCACCGCCGGGCACTGGCAGACGGGTAAACATGTTTTCCTGGTTGCCCAACGCCCTGACAATTTC CCGCTGCGTATTCGCGGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 512; Mature: 512
Protein sequence:
>512_residues MMRLCRPVTRLPALRSAEGGNVAMITAFVIPCILALTGIAIDLQNTVRQKSKVQAALDSAVLAGALGRQAGNTAAETTLD VQTYALALFTDQGGGLDCDPVAVTFDETNLDILGTVRCRQPTYLSSLIGHDELEFNVASTSTYGVGKLDVAFIFDVSGSM NSYNRLAQLKTAAVAAVDELLPDSRERDGTVRLAIASYNHSLNAGAYIGAVTETVTLSADGSNSTALSRYNSHNTKRMID QDSGKRFFYYQSGTCSSWNCGKYSSWSWDTKRRFFDDTGLADACVYERTGTQAATDAAPGSGAWIGAGNPRWSFYAGSSS KYDGWQNVENQNATGYGVGAYEGRHGTCMPSGPVPLTEDKTVLKDHVNALVAEGGTAGHLGIAWGWYLVSPEWAAIWPEA SEPLPYRQPQTSKAVILMTDGDFNIEHPTASRDSFRQSMDLCDGMKASSRRIQIYTVGFQVPSSVQRTGDGRTILEYCAT SPSHAFSADSGEELIEVYRSIARSISDLRLKE
Sequences:
>Translated_512_residues MMRLCRPVTRLPALRSAEGGNVAMITAFVIPCILALTGIAIDLQNTVRQKSKVQAALDSAVLAGALGRQAGNTAAETTLD VQTYALALFTDQGGGLDCDPVAVTFDETNLDILGTVRCRQPTYLSSLIGHDELEFNVASTSTYGVGKLDVAFIFDVSGSM NSYNRLAQLKTAAVAAVDELLPDSRERDGTVRLAIASYNHSLNAGAYIGAVTETVTLSADGSNSTALSRYNSHNTKRMID QDSGKRFFYYQSGTCSSWNCGKYSSWSWDTKRRFFDDTGLADACVYERTGTQAATDAAPGSGAWIGAGNPRWSFYAGSSS KYDGWQNVENQNATGYGVGAYEGRHGTCMPSGPVPLTEDKTVLKDHVNALVAEGGTAGHLGIAWGWYLVSPEWAAIWPEA SEPLPYRQPQTSKAVILMTDGDFNIEHPTASRDSFRQSMDLCDGMKASSRRIQIYTVGFQVPSSVQRTGDGRTILEYCAT SPSHAFSADSGEELIEVYRSIARSISDLRLKE >Mature_512_residues MMRLCRPVTRLPALRSAEGGNVAMITAFVIPCILALTGIAIDLQNTVRQKSKVQAALDSAVLAGALGRQAGNTAAETTLD VQTYALALFTDQGGGLDCDPVAVTFDETNLDILGTVRCRQPTYLSSLIGHDELEFNVASTSTYGVGKLDVAFIFDVSGSM NSYNRLAQLKTAAVAAVDELLPDSRERDGTVRLAIASYNHSLNAGAYIGAVTETVTLSADGSNSTALSRYNSHNTKRMID QDSGKRFFYYQSGTCSSWNCGKYSSWSWDTKRRFFDDTGLADACVYERTGTQAATDAAPGSGAWIGAGNPRWSFYAGSSS KYDGWQNVENQNATGYGVGAYEGRHGTCMPSGPVPLTEDKTVLKDHVNALVAEGGTAGHLGIAWGWYLVSPEWAAIWPEA SEPLPYRQPQTSKAVILMTDGDFNIEHPTASRDSFRQSMDLCDGMKASSRRIQIYTVGFQVPSSVQRTGDGRTILEYCAT SPSHAFSADSGEELIEVYRSIARSISDLRLKE
Specific function: Unknown
COG id: COG4961
COG function: function code U; Flp pilus assembly protein TadG
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55244; Mature: 55244
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRLCRPVTRLPALRSAEGGNVAMITAFVIPCILALTGIAIDLQNTVRQKSKVQAALDSA CCCHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHH VLAGALGRQAGNTAAETTLDVQTYALALFTDQGGGLDCDPVAVTFDETNLDILGTVRCRQ HHHHHHHCCCCCCHHHEEEEEEEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECC PTYLSSLIGHDELEFNVASTSTYGVGKLDVAFIFDVSGSMNSYNRLAQLKTAAVAAVDEL CHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH LPDSRERDGTVRLAIASYNHSLNAGAYIGAVTETVTLSADGSNSTALSRYNSHNTKRMID CCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCCCEEHHHCCCCCHHHHC QDSGKRFFYYQSGTCSSWNCGKYSSWSWDTKRRFFDDTGLADACVYERTGTQAATDAAPG CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHEEEECCCCCCCCCCCCC SGAWIGAGNPRWSFYAGSSSKYDGWQNVENQNATGYGVGAYEGRHGTCMPSGPVPLTEDK CCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCH TVLKDHVNALVAEGGTAGHLGIAWGWYLVSPEWAAIWPEASEPLPYRQPQTSKAVILMTD HHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEC GDFNIEHPTASRDSFRQSMDLCDGMKASSRRIQIYTVGFQVPSSVQRTGDGRTILEYCAT CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHCCCCHHHHHHHCC SPSHAFSADSGEELIEVYRSIARSISDLRLKE CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MMRLCRPVTRLPALRSAEGGNVAMITAFVIPCILALTGIAIDLQNTVRQKSKVQAALDSA CCCHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHH VLAGALGRQAGNTAAETTLDVQTYALALFTDQGGGLDCDPVAVTFDETNLDILGTVRCRQ HHHHHHHCCCCCCHHHEEEEEEEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECC PTYLSSLIGHDELEFNVASTSTYGVGKLDVAFIFDVSGSMNSYNRLAQLKTAAVAAVDEL CHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH LPDSRERDGTVRLAIASYNHSLNAGAYIGAVTETVTLSADGSNSTALSRYNSHNTKRMID CCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEEEEECCCCCCCEEHHHCCCCCHHHHC QDSGKRFFYYQSGTCSSWNCGKYSSWSWDTKRRFFDDTGLADACVYERTGTQAATDAAPG CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHEEEECCCCCCCCCCCCC SGAWIGAGNPRWSFYAGSSSKYDGWQNVENQNATGYGVGAYEGRHGTCMPSGPVPLTEDK CCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCH TVLKDHVNALVAEGGTAGHLGIAWGWYLVSPEWAAIWPEASEPLPYRQPQTSKAVILMTD HHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEC GDFNIEHPTASRDSFRQSMDLCDGMKASSRRIQIYTVGFQVPSSVQRTGDGRTILEYCAT CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHCCCCHHHHHHHCC SPSHAFSADSGEELIEVYRSIARSISDLRLKE CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA