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The map label for this gene is rci [H]

Identifier: 114799242

GI number: 114799242

Start: 282583

End: 283644

Strand: Reverse

Name: rci [H]

Synonym: HNE_0292

Alternate gene names: 114799242

Gene position: 283644-282583 (Counterclockwise)

Preceding gene: 114797897

Following gene: 114798126

Centisome position: 7.66

GC content: 62.81

Gene sequence:

>1062_bases
ATGTCGACGATTTACAGGATGCCGAAGGGGCAGTGGCGGGCCCAGGTGCGACGCAAGGGGCGCTATGTCTCCCAGTGCTT
CGTTCGCCGGAAGGACGCCGAAGAGTGGGCGCTCAAGATGGAGCGGCGGGTCGACCGGGGCGAAAGCGTCTCGAAGAACA
TCCCGGATGACCTCTCGACGTTCGCCCAGCTGATCGACCTGCACATCGCAGACATGCTGGAGGTCGGCAAGGCGCTGCGC
CGGTCGAAGACCTACTCCCTCGACAAGCTCAAAGGCAAACTCGGCCATGTCCGGCTTGAAGTGCTCGACCGTGAACGGAT
CATCCAGTTCGCGCGTGATCGCCGCACCGAAGGCGCAGGACCACCCACGATCTCGGCCGACATCTCCTATATCAAGACCG
TGCTCCTGCACGCGTCCGCCGTTCACGGCCTGCCGGTGAGCCCCGACCAGGTTGACCTCGCACGGGTCGCCCTGAAACGC
CTCGGCCTCGTCGGCAAGGCGCAGGAGCGTGACCGCCGCCCGACACAGGAAGAGCTCGACCAACTCCTCGCCTACTTCGA
AGGCAATTCCCGGCAGAAGTCGCCGATGGCACGTCTTGTCACCTTTGCAGTGGCAACCGCCATGCGTCAGTCCGAGATAT
GCTCGATCGAATGGCCCGATGTCGACGAGCGCCGCCGGACCGTCACTGTCCGTGACCGAAAGGACCCCCGGCAAAAGGAT
GGCAATGACCAACGCGTCCCGCTCGTAGATCTCACGGGCTATGACGCCTGGGACATCCTGATGGCGCAACGCCGGAGCAC
GACGAATAAGGGCCGCGTCTTCCCTTATAACCCCCGCTCAATCGGGACCGCGTTCCGGAGGGCCTGCGTGGAACTTGGGA
TTGAAGACCTCCATTTCCACGATCTGCGCCATGAGGGCACCAGCCGCCTCTTCGAAGCCGGTCTCCAGATCGAGCAGGTT
GCGCTCGTCACGGGCCATAAGGACTGGAAGATGCTGAAGCGCTACACCCACCTCTCCCCCGACACGATCGTGCGGATGGC
CAAAGACAGGAAGATCATATGA

Upstream 100 bases:

>100_bases
CAATCAAGGGACTAAAGAGAGAACGTGTGCAGTTTGTGTGCACCAATTTGCACACGTTTGTACCTGATTTAACCCCTCTG
TGCACACGGAGCGCACACAA

Downstream 100 bases:

>100_bases
TGCAGCGCGCTCACAAGGTTTCAGACAGCCGCGCTCCCTGTACGCCCACAGCCCGTAGCACCAGCGCAGATTCAGCGTCG
TCAGCCATCTTGAGGAAGGC

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 352

Protein sequence:

>353_residues
MSTIYRMPKGQWRAQVRRKGRYVSQCFVRRKDAEEWALKMERRVDRGESVSKNIPDDLSTFAQLIDLHIADMLEVGKALR
RSKTYSLDKLKGKLGHVRLEVLDRERIIQFARDRRTEGAGPPTISADISYIKTVLLHASAVHGLPVSPDQVDLARVALKR
LGLVGKAQERDRRPTQEELDQLLAYFEGNSRQKSPMARLVTFAVATAMRQSEICSIEWPDVDERRRTVTVRDRKDPRQKD
GNDQRVPLVDLTGYDAWDILMAQRRSTTNKGRVFPYNPRSIGTAFRRACVELGIEDLHFHDLRHEGTSRLFEAGLQIEQV
ALVTGHKDWKMLKRYTHLSPDTIVRMAKDRKII

Sequences:

>Translated_353_residues
MSTIYRMPKGQWRAQVRRKGRYVSQCFVRRKDAEEWALKMERRVDRGESVSKNIPDDLSTFAQLIDLHIADMLEVGKALR
RSKTYSLDKLKGKLGHVRLEVLDRERIIQFARDRRTEGAGPPTISADISYIKTVLLHASAVHGLPVSPDQVDLARVALKR
LGLVGKAQERDRRPTQEELDQLLAYFEGNSRQKSPMARLVTFAVATAMRQSEICSIEWPDVDERRRTVTVRDRKDPRQKD
GNDQRVPLVDLTGYDAWDILMAQRRSTTNKGRVFPYNPRSIGTAFRRACVELGIEDLHFHDLRHEGTSRLFEAGLQIEQV
ALVTGHKDWKMLKRYTHLSPDTIVRMAKDRKII
>Mature_352_residues
STIYRMPKGQWRAQVRRKGRYVSQCFVRRKDAEEWALKMERRVDRGESVSKNIPDDLSTFAQLIDLHIADMLEVGKALRR
SKTYSLDKLKGKLGHVRLEVLDRERIIQFARDRRTEGAGPPTISADISYIKTVLLHASAVHGLPVSPDQVDLARVALKRL
GLVGKAQERDRRPTQEELDQLLAYFEGNSRQKSPMARLVTFAVATAMRQSEICSIEWPDVDERRRTVTVRDRKDPRQKDG
NDQRVPLVDLTGYDAWDILMAQRRSTTNKGRVFPYNPRSIGTAFRRACVELGIEDLHFHDLRHEGTSRLFEAGLQIEQVA
LVTGHKDWKMLKRYTHLSPDTIVRMAKDRKII

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40694; Mature: 40563

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIYRMPKGQWRAQVRRKGRYVSQCFVRRKDAEEWALKMERRVDRGESVSKNIPDDLST
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
FAQLIDLHIADMLEVGKALRRSKTYSLDKLKGKLGHVRLEVLDRERIIQFARDRRTEGAG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PPTISADISYIKTVLLHASAVHGLPVSPDQVDLARVALKRLGLVGKAQERDRRPTQEELD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHH
QLLAYFEGNSRQKSPMARLVTFAVATAMRQSEICSIEWPDVDERRRTVTVRDRKDPRQKD
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
GNDQRVPLVDLTGYDAWDILMAQRRSTTNKGRVFPYNPRSIGTAFRRACVELGIEDLHFH
CCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCHHHHHHH
DLRHEGTSRLFEAGLQIEQVALVTGHKDWKMLKRYTHLSPDTIVRMAKDRKII
HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
STIYRMPKGQWRAQVRRKGRYVSQCFVRRKDAEEWALKMERRVDRGESVSKNIPDDLST
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
FAQLIDLHIADMLEVGKALRRSKTYSLDKLKGKLGHVRLEVLDRERIIQFARDRRTEGAG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PPTISADISYIKTVLLHASAVHGLPVSPDQVDLARVALKRLGLVGKAQERDRRPTQEELD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHH
QLLAYFEGNSRQKSPMARLVTFAVATAMRQSEICSIEWPDVDERRRTVTVRDRKDPRQKD
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCC
GNDQRVPLVDLTGYDAWDILMAQRRSTTNKGRVFPYNPRSIGTAFRRACVELGIEDLHFH
CCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCHHHHHHH
DLRHEGTSRLFEAGLQIEQVALVTGHKDWKMLKRYTHLSPDTIVRMAKDRKII
HHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]