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The map label for this gene is oprF [H]

Identifier: 114799158

GI number: 114799158

Start: 2573381

End: 2574274

Strand: Direct

Name: oprF [H]

Synonym: HNE_2454

Alternate gene names: 114799158

Gene position: 2573381-2574274 (Clockwise)

Preceding gene: 114798333

Following gene: 114797738

Centisome position: 69.46

GC content: 60.07

Gene sequence:

>894_bases
ATGAAACATACTCTTAAAAAGTCTGCCGGTCTCGCTGCGCTCTCCCTGTCACTATCGATTGGCGCCTGTTCGTCCGTACC
CGACCCGAGCCCTAGACTGCTCGCCGCCGAAGCGTCGCTTCAACAAGCCAAGGCTGATCCTGCCACGATGGAAACCGGTC
GCTCAGCCGTGGAGAAAGCCGATACGGCTCTCGCCGAAGCGCGCGATTATTACATGCGCGGCAAAACGGATGAATACATC
CATACCGTCCGCATGGGAGAAGGCTATGTGATGCTCGCTGAAACGCGCGGCTTGCAACGTGAAGCCAACACGCAGATTGA
AAGTCTGAACACTCAGCGCGCAGAAGTGGTCTCACAAGCCAGAATGCGTGAAGTGGCGTCTGCTGAGGCCGCCACTACTG
TCGCAGAAAACCGCGCCGATCGCTCGGACGCTGTAGCAGCGGGCGCAGTCGCCGACAGCGCCGCCTCTGAAACGGCCCGT
TTGGCCGCAGAAGCCCGCGCGGCGGCCCTTACGGCCGAACTTGCAGACTATGAGCAAACGAAAACAGATCTTGGCGTTAC
GCTGATCCTGCGGGATCTGCAATTTGCATCGGGGTCTGCGCTCCTGACAAGCGGCGCACAGGGACGGCTTGCGCCACTTG
CTTCGTACCTGTCGAAGCAGCCGGAATCCCGTATCCAGATTGCGGGACACACCGACTCGCAAGGCGCGGAAGCCTATAAT
CAGGATCTCTCGGCACGGCGGGCAGCATCGGTTGGGACTTACCTCGCTTCAACCGGCGTAGATAGCGGGCGCATCAACAC
TATCGGCCTTGGTGAGAGCACACCGCTGTCTTCAAACGACACTGCTGCCGGCCGGGCGATCAACCGGCGCGTCGAGATCA
CCATCCTCGACTAG

Upstream 100 bases:

>100_bases
GGAAAAGATCAAACTCCAAGCGCTGGAACGCACCGTCTCTGAAATCGAGACTGGTATCGCAACGTTACGCCGCGAACTGA
ATTCATAGAAAGACATGACC

Downstream 100 bases:

>100_bases
TTGAGGTTCAGACTAAACACCTGACACAGACAATCTGCCGGGACTTAGCATCCCGGCAGATTCATGAATCAGATGTCCTT
TGTATGGATTTCCAACTCGC

Product: OmpA family protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKHTLKKSAGLAALSLSLSIGACSSVPDPSPRLLAAEASLQQAKADPATMETGRSAVEKADTALAEARDYYMRGKTDEYI
HTVRMGEGYVMLAETRGLQREANTQIESLNTQRAEVVSQARMREVASAEAATTVAENRADRSDAVAAGAVADSAASETAR
LAAEARAAALTAELADYEQTKTDLGVTLILRDLQFASGSALLTSGAQGRLAPLASYLSKQPESRIQIAGHTDSQGAEAYN
QDLSARRAASVGTYLASTGVDSGRINTIGLGESTPLSSNDTAAGRAINRRVEITILD

Sequences:

>Translated_297_residues
MKHTLKKSAGLAALSLSLSIGACSSVPDPSPRLLAAEASLQQAKADPATMETGRSAVEKADTALAEARDYYMRGKTDEYI
HTVRMGEGYVMLAETRGLQREANTQIESLNTQRAEVVSQARMREVASAEAATTVAENRADRSDAVAAGAVADSAASETAR
LAAEARAAALTAELADYEQTKTDLGVTLILRDLQFASGSALLTSGAQGRLAPLASYLSKQPESRIQIAGHTDSQGAEAYN
QDLSARRAASVGTYLASTGVDSGRINTIGLGESTPLSSNDTAAGRAINRRVEITILD
>Mature_297_residues
MKHTLKKSAGLAALSLSLSIGACSSVPDPSPRLLAAEASLQQAKADPATMETGRSAVEKADTALAEARDYYMRGKTDEYI
HTVRMGEGYVMLAETRGLQREANTQIESLNTQRAEVVSQARMREVASAEAATTVAENRADRSDAVAAGAVADSAASETAR
LAAEARAAALTAELADYEQTKTDLGVTLILRDLQFASGSALLTSGAQGRLAPLASYLSKQPESRIQIAGHTDSQGAEAYN
QDLSARRAASVGTYLASTGVDSGRINTIGLGESTPLSSNDTAAGRAINRRVEITILD

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=43.2692307692308, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787191, Length=115, Percent_Identity=38.2608695652174, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788957, Length=102, Percent_Identity=36.2745098039216, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 31075; Mature: 31075

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHTLKKSAGLAALSLSLSIGACSSVPDPSPRLLAAEASLQQAKADPATMETGRSAVEKA
CCCCHHHHCCEEEEEEEEEECCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHH
DTALAEARDYYMRGKTDEYIHTVRMGEGYVMLAETRGLQREANTQIESLNTQRAEVVSQA
HHHHHHHHHHHHCCCCHHHEEEEEECCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHH
RMREVASAEAATTVAENRADRSDAVAAGAVADSAASETARLAAEARAAALTAELADYEQT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTDLGVTLILRDLQFASGSALLTSGAQGRLAPLASYLSKQPESRIQIAGHTDSQGAEAYN
HHHCCHHEEEEHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
QDLSARRAASVGTYLASTGVDSGRINTIGLGESTPLSSNDTAAGRAINRRVEITILD
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEEC
>Mature Secondary Structure
MKHTLKKSAGLAALSLSLSIGACSSVPDPSPRLLAAEASLQQAKADPATMETGRSAVEKA
CCCCHHHHCCEEEEEEEEEECCCCCCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHH
DTALAEARDYYMRGKTDEYIHTVRMGEGYVMLAETRGLQREANTQIESLNTQRAEVVSQA
HHHHHHHHHHHHCCCCHHHEEEEEECCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHHHH
RMREVASAEAATTVAENRADRSDAVAAGAVADSAASETARLAAEARAAALTAELADYEQT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTDLGVTLILRDLQFASGSALLTSGAQGRLAPLASYLSKQPESRIQIAGHTDSQGAEAYN
HHHCCHHEEEEHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHH
QDLSARRAASVGTYLASTGVDSGRINTIGLGESTPLSSNDTAAGRAINRRVEITILD
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]