| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is eda [H]
Identifier: 114799078
GI number: 114799078
Start: 1194085
End: 1194720
Strand: Direct
Name: eda [H]
Synonym: HNE_1187
Alternate gene names: 114799078
Gene position: 1194085-1194720 (Clockwise)
Preceding gene: 114799520
Following gene: 114799044
Centisome position: 32.23
GC content: 66.51
Gene sequence:
>636_bases ATGTCCGATATTGTTCAGAAACTTGATGCCGCCGCAAAACAGGCGCCGGTTGTGCCGGTTCTTGTGGTGGACTCAGCCGC TTCGGCTGGACCGCTGGCGAGCGCGCTGGAAGCGGCGGGCGTGACGATTGCGGAAGTGACGCTGCGCACCGCTGACGGGC TGAAGGTTATCGAGGCGATGCGCAAGGCGGCGTCGGGGCTGATCGTCGGCGCGGGTACGGTACTCAGTGGGCGCGATGTT GAGGCCGCGCTGAATGCGGGCGCGGAGTTTCTGGTGTCGCCCGGCATGTCGCCTGGGCTGCGCGCGGCGCTGGGCGGACG CGAGCATCTGATGATCCCCGGCGTGGCAACCGCCAGCGAGGCGATGGCGCGGATGGAAGAGGGGTTTCAGCGGTTGAAGC TGTTTCCGGCCGCTGTGGCGGGAGGTGTCCCGGCGCTGAAAGCGCTGGCCGGGCCGATGCCGCATCTGCGGTTCATGCCG ACGGGCGGGATTACCGAAGATGAGGTGAAGGCGTATCTTGGCCAGCCGAACGTCTTTGCGGTGGGCGGTTCGTGGATCGC AAGCCAGAGCGATATAGCGGCGGGCAACTGGGCGAAGATTACCGAGACCGCGCGGCGCCTGCTGGCAATGGGGTGA
Upstream 100 bases:
>100_bases CGCTTGTCATTGGGGGCGACACGGGCCACAACAACGTTGACAGCCGTATGGGCGGGCTTTCGCCCCGCCGACCGCACTCC TGACCTCCGGGGCCTTATCC
Downstream 100 bases:
>100_bases GGCGCGGGCCTGCTGGCGGTGTCAGCGGGCGAATTTCTGCTTCACCTTTTGCGCCACATTGATCACCGACTGTTCGACGC CTTCGGGCCGGCCGTGAATG
Product: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
Products: NA
Alternate protein names: KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase [H]
Number of amino acids: Translated: 211; Mature: 210
Protein sequence:
>211_residues MSDIVQKLDAAAKQAPVVPVLVVDSAASAGPLASALEAAGVTIAEVTLRTADGLKVIEAMRKAASGLIVGAGTVLSGRDV EAALNAGAEFLVSPGMSPGLRAALGGREHLMIPGVATASEAMARMEEGFQRLKLFPAAVAGGVPALKALAGPMPHLRFMP TGGITEDEVKAYLGQPNVFAVGGSWIASQSDIAAGNWAKITETARRLLAMG
Sequences:
>Translated_211_residues MSDIVQKLDAAAKQAPVVPVLVVDSAASAGPLASALEAAGVTIAEVTLRTADGLKVIEAMRKAASGLIVGAGTVLSGRDV EAALNAGAEFLVSPGMSPGLRAALGGREHLMIPGVATASEAMARMEEGFQRLKLFPAAVAGGVPALKALAGPMPHLRFMP TGGITEDEVKAYLGQPNVFAVGGSWIASQSDIAAGNWAKITETARRLLAMG >Mature_210_residues SDIVQKLDAAAKQAPVVPVLVVDSAASAGPLASALEAAGVTIAEVTLRTADGLKVIEAMRKAASGLIVGAGTVLSGRDVE AALNAGAEFLVSPGMSPGLRAALGGREHLMIPGVATASEAMARMEEGFQRLKLFPAAVAGGVPALKALAGPMPHLRFMPT GGITEDEVKAYLGQPNVFAVGGSWIASQSDIAAGNWAKITETARRLLAMG
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. PARTICIPATES IN THE REGULATION OF THE INTRACELLULAR LEVEL OF GLYOXYLATE. [C]
COG id: COG0800
COG function: function code G; 2-keto-3-deoxy-6-phosphogluconate aldolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the KHG/KDPG aldolase family [H]
Homologues:
Organism=Escherichia coli, GI1788156, Length=177, Percent_Identity=44.6327683615819, Blast_Score=140, Evalue=7e-35,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000887 - InterPro: IPR013785 [H]
Pfam domain/function: PF01081 Aldolase [H]
EC number: =4.1.2.14 [H]
Molecular weight: Translated: 21352; Mature: 21221
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00159 ALDOLASE_KDPG_KHG_1 ; PS00160 ALDOLASE_KDPG_KHG_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDIVQKLDAAAKQAPVVPVLVVDSAASAGPLASALEAAGVTIAEVTLRTADGLKVIEAM CHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHH RKAASGLIVGAGTVLSGRDVEAALNAGAEFLVSPGMSPGLRAALGGREHLMIPGVATASE HHHHCCEEEECCCEECCCCHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEECCCCHHHH AMARMEEGFQRLKLFPAAVAGGVPALKALAGPMPHLRFMPTGGITEDEVKAYLGQPNVFA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCEEE VGGSWIASQSDIAAGNWAKITETARRLLAMG ECCCEECCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure SDIVQKLDAAAKQAPVVPVLVVDSAASAGPLASALEAAGVTIAEVTLRTADGLKVIEAM HHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCCCHHHHHHH RKAASGLIVGAGTVLSGRDVEAALNAGAEFLVSPGMSPGLRAALGGREHLMIPGVATASE HHHHCCEEEECCCEECCCCHHHHHHCCCCEEECCCCCCCHHHHHCCCCEEEECCCCHHHH AMARMEEGFQRLKLFPAAVAGGVPALKALAGPMPHLRFMPTGGITEDEVKAYLGQPNVFA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCEEE VGGSWIASQSDIAAGNWAKITETARRLLAMG ECCCEECCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]