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The map label for this gene is ygaF [C]

Identifier: 114799066

GI number: 114799066

Start: 542135

End: 543265

Strand: Reverse

Name: ygaF [C]

Synonym: HNE_0546

Alternate gene names: 114799066

Gene position: 543265-542135 (Counterclockwise)

Preceding gene: 114797052

Following gene: 114798540

Centisome position: 14.66

GC content: 65.96

Gene sequence:

>1131_bases
ATGGCAGACAGTTTCGAGGCAGATGTGGTCATCATCGGGGCGGGCGTAATCGGCCTCGCCTGCGGGCGCGCCCTCGCCCG
CGCCGGCCGTGAGGTGATCGTGCTGGAAGCCGAGGAACTGATCGCCGCGCACACGTCCTCGCGCAACTCAGAGGTCATCC
ATGCGGGGCTCTACTACGCCACCGGCAGCCTGAAAGCCCGCCACTGCGTCAATGGCCGGCGGATGCTCTACAGCTATCTC
GATGCCCACGGCGTCACCGTGAAGCGCTGCGGCAAGCTGGTGGTGGCCATCGGCCCGGCAGAAGCCGGCGACCTCGGCAG
CATCCTCAAGCGGGCGCAGGCCAACGGCGTGGAAGACCTTCGCCTCATCGACGGCGGCGAAGCGCGCGCGATGGAACCGG
CCCTCAGCCCCGAAGTGACCGCCGCCATTCATTCGCCCGTCTCCGGCATCTTCGACAGCCACGCCTATTTCCTCGCCCTG
CAGGGAGAACTGGAAGATGCGGGTGGCTCTGTCGCCTTTAACACGCCCGTCCTGTCTGGCGCGGTCGAGGCCGGGCACGT
CCGGTTGGAAACAGGCGGCAGCACGCCGGCGACCATCCGCGCGCGCACGGTGATCAATGCGGCAGGCCATTATGCGCCCG
CGATCGCCGCCCGCATCGAAGGCCCGCACGTGGCGGACCTGCCCGAAACCCATTTCGTCAAAGGCAGCTATTTCGGCATC
AGCGGCCGCACACCCTTCTCCCGGCTGATCTACCCCATGCCCACTACATCAAGCCTTGGCCTGCACCTGACCATCGACCT
GGGCGGCCGCGGCAAGGTGGGGCCAGACGCCGAATGGCTGCCCGAGGGCGCCGCGCCGCCCTTCGATTACCGCGTGAACC
CTGACCGGGCGGCCATCTTCCATGAAGAAGTCAGCCGCTATTGGCCCAGCCTGACGCTTGACCGGCTGATGCCCGATTAT
TCCGGAATCCGGCCCAAAATCGTGCCCCAGGGCGCCCCTTCCGGCGATTTCCGGATAGAAGGTCCCGAAACCCATGGCAG
CCCCGGCCTGATTAACCTTCTGGGGATCGAAAGCCCTGGACTGACCTCATCACTCTCGATCGCAGATCATGTCGCAGAGC
TTGCAGGATAG

Upstream 100 bases:

>100_bases
GCATCGCTGCCAGCATGGCAAAAGCAAACAGAATCAAGCTGCGTCCCTGCATGAGTGTTGATACTACTCCCAATCTGGGT
TTCCCGCGAGCGGCATGAGA

Downstream 100 bases:

>100_bases
GGTGCTTGCGCGCCCCGGCTCCAATGTGTATCAGGCGCCTTCGCTGATGCGGCGCTCAGGTTCGGTAGCTCAGTTGGTTA
GAGCGCGCGACTCATAATCG

Product: FAD-binding oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MADSFEADVVIIGAGVIGLACGRALARAGREVIVLEAEELIAAHTSSRNSEVIHAGLYYATGSLKARHCVNGRRMLYSYL
DAHGVTVKRCGKLVVAIGPAEAGDLGSILKRAQANGVEDLRLIDGGEARAMEPALSPEVTAAIHSPVSGIFDSHAYFLAL
QGELEDAGGSVAFNTPVLSGAVEAGHVRLETGGSTPATIRARTVINAAGHYAPAIAARIEGPHVADLPETHFVKGSYFGI
SGRTPFSRLIYPMPTTSSLGLHLTIDLGGRGKVGPDAEWLPEGAAPPFDYRVNPDRAAIFHEEVSRYWPSLTLDRLMPDY
SGIRPKIVPQGAPSGDFRIEGPETHGSPGLINLLGIESPGLTSSLSIADHVAELAG

Sequences:

>Translated_376_residues
MADSFEADVVIIGAGVIGLACGRALARAGREVIVLEAEELIAAHTSSRNSEVIHAGLYYATGSLKARHCVNGRRMLYSYL
DAHGVTVKRCGKLVVAIGPAEAGDLGSILKRAQANGVEDLRLIDGGEARAMEPALSPEVTAAIHSPVSGIFDSHAYFLAL
QGELEDAGGSVAFNTPVLSGAVEAGHVRLETGGSTPATIRARTVINAAGHYAPAIAARIEGPHVADLPETHFVKGSYFGI
SGRTPFSRLIYPMPTTSSLGLHLTIDLGGRGKVGPDAEWLPEGAAPPFDYRVNPDRAAIFHEEVSRYWPSLTLDRLMPDY
SGIRPKIVPQGAPSGDFRIEGPETHGSPGLINLLGIESPGLTSSLSIADHVAELAG
>Mature_375_residues
ADSFEADVVIIGAGVIGLACGRALARAGREVIVLEAEELIAAHTSSRNSEVIHAGLYYATGSLKARHCVNGRRMLYSYLD
AHGVTVKRCGKLVVAIGPAEAGDLGSILKRAQANGVEDLRLIDGGEARAMEPALSPEVTAAIHSPVSGIFDSHAYFLALQ
GELEDAGGSVAFNTPVLSGAVEAGHVRLETGGSTPATIRARTVINAAGHYAPAIAARIEGPHVADLPETHFVKGSYFGIS
GRTPFSRLIYPMPTTSSLGLHLTIDLGGRGKVGPDAEWLPEGAAPPFDYRVNPDRAAIFHEEVSRYWPSLTLDRLMPDYS
GIRPKIVPQGAPSGDFRIEGPETHGSPGLINLLGIESPGLTSSLSIADHVAELAG

Specific function: Unknown

COG id: COG0579

COG function: function code R; Predicted dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI13376331, Length=393, Percent_Identity=27.2264631043257, Blast_Score=117, Evalue=2e-26,
Organism=Escherichia coli, GI87082148, Length=379, Percent_Identity=28.7598944591029, Blast_Score=106, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17565764, Length=406, Percent_Identity=28.0788177339901, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24585081, Length=382, Percent_Identity=29.0575916230367, Blast_Score=122, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: NA

Molecular weight: Translated: 39430; Mature: 39299

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSFEADVVIIGAGVIGLACGRALARAGREVIVLEAEELIAAHTSSRNSEVIHAGLYYA
CCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCCCEEEEEEEEE
TGSLKARHCVNGRRMLYSYLDAHGVTVKRCGKLVVAIGPAEAGDLGSILKRAQANGVEDL
ECCCCHHHHCCHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCEE
RLIDGGEARAMEPALSPEVTAAIHSPVSGIFDSHAYFLALQGELEDAGGSVAFNTPVLSG
EEECCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCEEEEEEECCCCCCCCEEEECCCHHCC
AVEAGHVRLETGGSTPATIRARTVINAAGHYAPAIAARIEGPHVADLPETHFVKGSYFGI
CCCCCEEEEECCCCCCCEEEEEEEEECCCCCCCHHEEECCCCCCCCCCCCEEECCEEEEC
SGRTPFSRLIYPMPTTSSLGLHLTIDLGGRGKVGPDAEWLPEGAAPPFDYRVNPDRAAIF
CCCCCHHHEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHH
HEEVSRYWPSLTLDRLMPDYSGIRPKIVPQGAPSGDFRIEGPETHGSPGLINLLGIESPG
HHHHHHHCCCCCHHHHCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCC
LTSSLSIADHVAELAG
CCCHHHHHHHHHHHCC
>Mature Secondary Structure 
ADSFEADVVIIGAGVIGLACGRALARAGREVIVLEAEELIAAHTSSRNSEVIHAGLYYA
CCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCCCEEEEEEEEE
TGSLKARHCVNGRRMLYSYLDAHGVTVKRCGKLVVAIGPAEAGDLGSILKRAQANGVEDL
ECCCCHHHHCCHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCEE
RLIDGGEARAMEPALSPEVTAAIHSPVSGIFDSHAYFLALQGELEDAGGSVAFNTPVLSG
EEECCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCEEEEEEECCCCCCCCEEEECCCHHCC
AVEAGHVRLETGGSTPATIRARTVINAAGHYAPAIAARIEGPHVADLPETHFVKGSYFGI
CCCCCEEEEECCCCCCCEEEEEEEEECCCCCCCHHEEECCCCCCCCCCCCEEECCEEEEC
SGRTPFSRLIYPMPTTSSLGLHLTIDLGGRGKVGPDAEWLPEGAAPPFDYRVNPDRAAIF
CCCCCHHHEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHH
HEEVSRYWPSLTLDRLMPDYSGIRPKIVPQGAPSGDFRIEGPETHGSPGLINLLGIESPG
HHHHHHHCCCCCHHHHCCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCC
LTSSLSIADHVAELAG
CCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]