| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is mutL [H]
Identifier: 114799039
GI number: 114799039
Start: 928151
End: 930055
Strand: Direct
Name: mutL [H]
Synonym: HNE_0913
Alternate gene names: 114799039
Gene position: 928151-930055 (Clockwise)
Preceding gene: 114800226
Following gene: 114800070
Centisome position: 25.05
GC content: 67.87
Gene sequence:
>1905_bases ATGGCTGATTCTGCTCCCCCCCGTCCGACGATCCGCAAACTGCCCGCTGATGTGGTCAACCGCATCGCGGCGGGCGAGGT CGTCGAGCGGCCCGCAGCCGCGGTGAAGGAGCTTGTGGAAAACGCCCTCGATGCCGGCGCGCGCAGCATTGCCATCGCCA TCGAGGAAGGCGGCCTCAAGCGCATCACCATCGAAGATGATGGCTGCGGCCTCTCCGCCGATGACCTGCTGATCGCGCTG GAGCGTCACGCCACCTCCAAACTCGTGCCGGACACCGAAGGCCGCGTAGACCTCCTCAACATCTACACGATGGGGTTCCG CGGCGAGGCCTTGCCCTCCATTGCCTCGGTCAGCCGCATGCGCATCGTTTCCCGCGCCAGCGGGGAAGACGCCGCCGAAA TCTTCTCCGATGCCGGCCGCCTCGACGGTCCCCGTCCCGCCGCCTTTACCGGCCGCAGCGAAACCGGCACCCGCATCGAC GTGAACGACCTTTTCCACGCCACGCCCGCCCGCCTCAAATTCATGCGCGGCGAACGCGCCGAAGCGATGGCCGTCACCGA CGCGGTCAAGCGCCTCGCCATGGCCAATCCGGAAGTCGCCTTCAGCCTCGAAAGCAATGGCCGCAGCCTCTTCCGCTATC CCGCTGAAGGTCCGGGCGATGCCGGGCGCCTCAAACGCCTCGGCGCGATCATGGGCCGGGACTTTTCAGACAATGCCGTC GCCGTCGACGCCACGCGCGAAGGCGTGCGCCTGTCAGGCTTTGCGGGCCTGCCAACACTCAATCGCGGCAACGCGCAGAT GCAGTTCCTGTTCGTCAATGGCCGCCCGGTGAAAGACCGTATGCTGACAGGCGTGGTACGCGCCGCCTATCAGGATTTCC TGGCGCGGGACCGCCACCCGATGGCCGCGCTGTTTGTGGACCTTGATCCCGAAGGCGTGGACGTCAACGTCCACCCCGCC AAAACCGAAGTGCGTTTCCGCGATGCAGGCGGCGTGCGCGGCCTGATGATCTCGGCGCTGCGCCACGCGCTCGCCGCCGC CGGCCACCGCGCCTCCACCACCGTCGCCGGCTTCGCCCTCGGCAAGGCCCGCGCCGAGCCCGCCCCGCAGGCCGGCTTCC TCTGGCAGGCGCCCCAGCCGGGTGGCTATGTCCAGCGCCCCGCCATGCCCCCGCAAGGCTACGCCGCCCGCCAGGTGGAA GAAGACGGCGCCAGCGCCCCCTTCGCCCCACGCGGCTATGTGCCAGACTATGTCCCCGATCAGGGCGCTCCGGGCGCAAA GGTCGAAACCGGCCCCATGCCCGCGCCGGGCATGCTCGGGGAATACCCCCTCGGCGCCGCCCGTGCCCAGGTCCACGAAA CCTATATCATCGCTCAGACGGCGGACGGCATCGTCATCGTCGACCAGCATGCCGCCCATGAGCGCCTCGTCTACGAAGCC ATGAAACGCCAGATGGCCGAAGGCGGCGTCCGGCGTCAGGCGCTGCTCATCCCGGATATTGTCGAACTCTCCGAAGACGA AGCCCACCGCGTCTGCGCCCGCGCTGAGGAACTCGCCGCCCTTGGCCTCGAAATCGAGCCTTTCGGCCCCGGCGCCATCG CCGTACGCGCCACGCCCGCCCTCTTCGGAGAGATGGACGCCGCCGGCCTCATCCGCGATCTCGCCGATGATTTTGCCGAA TATGAAGCGGGCCTCACCCTGTCGGAACGCTTCGAAGAAGTGATGGGCAACATGGCCTGCCGCTCCTCCATCCGCGCCGG GCGCCGTCTGAATGCGGATGAAATGAACGCGCTCCTGCGCCAGATGGAAGCCACACCCCATTCGGGCCAGTGCAATCACG GCCGCCCCACCTATGTCGAGCTGAAACTCGCCGACATCGAACGCCTCTTCGGCCGCCGGGGATGA
Upstream 100 bases:
>100_bases TTTATCAAAACCCGCAGAAACAAGGCGCTGGCGCCAGTATCCGCCGGGCCGCAGCGCGCCAGACGACATCCCGCCCCGGA TCGGCTAATCTTTGCCCCTC
Downstream 100 bases:
>100_bases CCGGGATGCGGCTCAGCCGGCGCAGCCTGATGGCAGGGGTCGCAGGCGCGGCCCTCACTGCCTGCGCTCACCGGGCAGAC CCCATGCGTATCCCCGCCGC
Product: DNA mismatch repair protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 634; Mature: 633
Protein sequence:
>634_residues MADSAPPRPTIRKLPADVVNRIAAGEVVERPAAAVKELVENALDAGARSIAIAIEEGGLKRITIEDDGCGLSADDLLIAL ERHATSKLVPDTEGRVDLLNIYTMGFRGEALPSIASVSRMRIVSRASGEDAAEIFSDAGRLDGPRPAAFTGRSETGTRID VNDLFHATPARLKFMRGERAEAMAVTDAVKRLAMANPEVAFSLESNGRSLFRYPAEGPGDAGRLKRLGAIMGRDFSDNAV AVDATREGVRLSGFAGLPTLNRGNAQMQFLFVNGRPVKDRMLTGVVRAAYQDFLARDRHPMAALFVDLDPEGVDVNVHPA KTEVRFRDAGGVRGLMISALRHALAAAGHRASTTVAGFALGKARAEPAPQAGFLWQAPQPGGYVQRPAMPPQGYAARQVE EDGASAPFAPRGYVPDYVPDQGAPGAKVETGPMPAPGMLGEYPLGAARAQVHETYIIAQTADGIVIVDQHAAHERLVYEA MKRQMAEGGVRRQALLIPDIVELSEDEAHRVCARAEELAALGLEIEPFGPGAIAVRATPALFGEMDAAGLIRDLADDFAE YEAGLTLSERFEEVMGNMACRSSIRAGRRLNADEMNALLRQMEATPHSGQCNHGRPTYVELKLADIERLFGRRG
Sequences:
>Translated_634_residues MADSAPPRPTIRKLPADVVNRIAAGEVVERPAAAVKELVENALDAGARSIAIAIEEGGLKRITIEDDGCGLSADDLLIAL ERHATSKLVPDTEGRVDLLNIYTMGFRGEALPSIASVSRMRIVSRASGEDAAEIFSDAGRLDGPRPAAFTGRSETGTRID VNDLFHATPARLKFMRGERAEAMAVTDAVKRLAMANPEVAFSLESNGRSLFRYPAEGPGDAGRLKRLGAIMGRDFSDNAV AVDATREGVRLSGFAGLPTLNRGNAQMQFLFVNGRPVKDRMLTGVVRAAYQDFLARDRHPMAALFVDLDPEGVDVNVHPA KTEVRFRDAGGVRGLMISALRHALAAAGHRASTTVAGFALGKARAEPAPQAGFLWQAPQPGGYVQRPAMPPQGYAARQVE EDGASAPFAPRGYVPDYVPDQGAPGAKVETGPMPAPGMLGEYPLGAARAQVHETYIIAQTADGIVIVDQHAAHERLVYEA MKRQMAEGGVRRQALLIPDIVELSEDEAHRVCARAEELAALGLEIEPFGPGAIAVRATPALFGEMDAAGLIRDLADDFAE YEAGLTLSERFEEVMGNMACRSSIRAGRRLNADEMNALLRQMEATPHSGQCNHGRPTYVELKLADIERLFGRRG >Mature_633_residues ADSAPPRPTIRKLPADVVNRIAAGEVVERPAAAVKELVENALDAGARSIAIAIEEGGLKRITIEDDGCGLSADDLLIALE RHATSKLVPDTEGRVDLLNIYTMGFRGEALPSIASVSRMRIVSRASGEDAAEIFSDAGRLDGPRPAAFTGRSETGTRIDV NDLFHATPARLKFMRGERAEAMAVTDAVKRLAMANPEVAFSLESNGRSLFRYPAEGPGDAGRLKRLGAIMGRDFSDNAVA VDATREGVRLSGFAGLPTLNRGNAQMQFLFVNGRPVKDRMLTGVVRAAYQDFLARDRHPMAALFVDLDPEGVDVNVHPAK TEVRFRDAGGVRGLMISALRHALAAAGHRASTTVAGFALGKARAEPAPQAGFLWQAPQPGGYVQRPAMPPQGYAARQVEE DGASAPFAPRGYVPDYVPDQGAPGAKVETGPMPAPGMLGEYPLGAARAQVHETYIIAQTADGIVIVDQHAAHERLVYEAM KRQMAEGGVRRQALLIPDIVELSEDEAHRVCARAEELAALGLEIEPFGPGAIAVRATPALFGEMDAAGLIRDLADDFAEY EAGLTLSERFEEVMGNMACRSSIRAGRRLNADEMNALLRQMEATPHSGQCNHGRPTYVELKLADIERLFGRRG
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family [H]
Homologues:
Organism=Homo sapiens, GI4557757, Length=319, Percent_Identity=35.423197492163, Blast_Score=185, Evalue=9e-47, Organism=Homo sapiens, GI4505913, Length=371, Percent_Identity=26.9541778975741, Blast_Score=125, Evalue=1e-28, Organism=Homo sapiens, GI310128478, Length=371, Percent_Identity=26.9541778975741, Blast_Score=125, Evalue=1e-28, Organism=Homo sapiens, GI4505911, Length=341, Percent_Identity=26.099706744868, Blast_Score=119, Evalue=1e-26, Organism=Homo sapiens, GI189458898, Length=341, Percent_Identity=26.099706744868, Blast_Score=118, Evalue=1e-26, Organism=Homo sapiens, GI189458896, Length=334, Percent_Identity=27.2455089820359, Blast_Score=110, Evalue=5e-24, Organism=Homo sapiens, GI310128480, Length=326, Percent_Identity=24.5398773006135, Blast_Score=87, Evalue=6e-17, Organism=Homo sapiens, GI263191589, Length=226, Percent_Identity=27.4336283185841, Blast_Score=87, Evalue=6e-17, Organism=Homo sapiens, GI91992162, Length=291, Percent_Identity=27.8350515463918, Blast_Score=84, Evalue=5e-16, Organism=Homo sapiens, GI91992160, Length=291, Percent_Identity=27.8350515463918, Blast_Score=84, Evalue=5e-16, Organism=Escherichia coli, GI1790612, Length=341, Percent_Identity=42.2287390029325, Blast_Score=248, Evalue=1e-66, Organism=Caenorhabditis elegans, GI71991825, Length=334, Percent_Identity=36.5269461077844, Blast_Score=178, Evalue=9e-45, Organism=Caenorhabditis elegans, GI17562796, Length=374, Percent_Identity=25.668449197861, Blast_Score=130, Evalue=2e-30, Organism=Saccharomyces cerevisiae, GI6323819, Length=358, Percent_Identity=31.8435754189944, Blast_Score=172, Evalue=1e-43, Organism=Saccharomyces cerevisiae, GI6325093, Length=729, Percent_Identity=22.4965706447188, Blast_Score=115, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6324247, Length=351, Percent_Identity=25.3561253561254, Blast_Score=103, Evalue=9e-23, Organism=Saccharomyces cerevisiae, GI6323063, Length=358, Percent_Identity=24.0223463687151, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI17136968, Length=321, Percent_Identity=36.7601246105919, Blast_Score=186, Evalue=6e-47, Organism=Drosophila melanogaster, GI17136970, Length=363, Percent_Identity=27.2727272727273, Blast_Score=99, Evalue=7e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014763 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C [H]
EC number: NA
Molecular weight: Translated: 67945; Mature: 67814
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS00058 DNA_MISMATCH_REPAIR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADSAPPRPTIRKLPADVVNRIAAGEVVERPAAAVKELVENALDAGARSIAIAIEEGGLK CCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEE RITIEDDGCGLSADDLLIALERHATSKLVPDTEGRVDLLNIYTMGFRGEALPSIASVSRM EEEEECCCCCCCHHHHEEEEHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH RIVSRASGEDAAEIFSDAGRLDGPRPAAFTGRSETGTRIDVNDLFHATPARLKFMRGERA HHHHHCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEHHHHHCCCHHHHHHHCCCCH EAMAVTDAVKRLAMANPEVAFSLESNGRSLFRYPAEGPGDAGRLKRLGAIMGRDFSDNAV HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEE AVDATREGVRLSGFAGLPTLNRGNAQMQFLFVNGRPVKDRMLTGVVRAAYQDFLARDRHP EEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC MAALFVDLDPEGVDVNVHPAKTEVRFRDAGGVRGLMISALRHALAAAGHRASTTVAGFAL EEEEEEEECCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH GKARAEPAPQAGFLWQAPQPGGYVQRPAMPPQGYAARQVEEDGASAPFAPRGYVPDYVPD HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC QGAPGAKVETGPMPAPGMLGEYPLGAARAQVHETYIIAQTADGIVIVDQHAAHERLVYEA CCCCCCEEECCCCCCCCCCCCCCCCHHHHHHEEEEEEEECCCCEEEECCCHHHHHHHHHH MKRQMAEGGVRRQALLIPDIVELSEDEAHRVCARAEELAALGLEIEPFGPGAIAVRATPA HHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECHH LFGEMDAAGLIRDLADDFAEYEAGLTLSERFEEVMGNMACRSSIRAGRRLNADEMNALLR HHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH QMEATPHSGQCNHGRPTYVELKLADIERLFGRRG HHHCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCC >Mature Secondary Structure ADSAPPRPTIRKLPADVVNRIAAGEVVERPAAAVKELVENALDAGARSIAIAIEEGGLK CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEE RITIEDDGCGLSADDLLIALERHATSKLVPDTEGRVDLLNIYTMGFRGEALPSIASVSRM EEEEECCCCCCCHHHHEEEEHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHH RIVSRASGEDAAEIFSDAGRLDGPRPAAFTGRSETGTRIDVNDLFHATPARLKFMRGERA HHHHHCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEHHHHHCCCHHHHHHHCCCCH EAMAVTDAVKRLAMANPEVAFSLESNGRSLFRYPAEGPGDAGRLKRLGAIMGRDFSDNAV HHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEE AVDATREGVRLSGFAGLPTLNRGNAQMQFLFVNGRPVKDRMLTGVVRAAYQDFLARDRHP EEECCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC MAALFVDLDPEGVDVNVHPAKTEVRFRDAGGVRGLMISALRHALAAAGHRASTTVAGFAL EEEEEEEECCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH GKARAEPAPQAGFLWQAPQPGGYVQRPAMPPQGYAARQVEEDGASAPFAPRGYVPDYVPD HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC QGAPGAKVETGPMPAPGMLGEYPLGAARAQVHETYIIAQTADGIVIVDQHAAHERLVYEA CCCCCCEEECCCCCCCCCCCCCCCCHHHHHHEEEEEEEECCCCEEEECCCHHHHHHHHHH MKRQMAEGGVRRQALLIPDIVELSEDEAHRVCARAEELAALGLEIEPFGPGAIAVRATPA HHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECHH LFGEMDAAGLIRDLADDFAEYEAGLTLSERFEEVMGNMACRSSIRAGRRLNADEMNALLR HHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH QMEATPHSGQCNHGRPTYVELKLADIERLFGRRG HHHCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA