| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is cbg-1 [H]
Identifier: 114799008
GI number: 114799008
Start: 2559259
End: 2561724
Strand: Reverse
Name: cbg-1 [H]
Synonym: HNE_2446
Alternate gene names: 114799008
Gene position: 2561724-2559259 (Counterclockwise)
Preceding gene: 114799899
Following gene: 114799927
Centisome position: 69.14
GC content: 60.62
Gene sequence:
>2466_bases ATGGCATCACAATCTCCGGAAACCGAAGCGCGCATTTCAGCGCTGCTCGCAGAAATGACTCTCGAAGAGAAAGTCTCGCT TATGGCGGGGCGGGATTTCTGGACCCTTCCGGCCATCGAGCGTCTGGGCATTCCCAGCCTGCGCGTCTCCGATGGCCCCA CAGGCCTGCGATCGGTGAACTCCGAGGCCGCCACCGTGTTTCCCGTGGGTGTCGCCCTGGCCGCCACATGGAATGAAGCG CTTGTCGGCGAAGTGGGCGCCGCCATCGCCCGCGAAGCCATTGCACATGACGTGGACGTCCTGCTTGCCCCGGCCGTGAA CATCCAGCGCACCCCGCTGGGCGGGCGCAACTTTGAAACCTATTCGGAAGACCCCCGCCTCGCTGCCGAGATCGCGACGG CCTATGTCGCCGGGGTGCAGTCTGAAGGCGTCGGTACATCGCTGAAGCATTACGCTGCGAATAATCAGGAACACGAGCGC ATGACAGGTAGCTCCGACATGTCGGAGCGCACCTTGCGCGAGATTTACCTCGCCGTATACGAGCCGGTCATCCGCCGCGC CAATCCGTGGACGGTCATGGGCGCCTATAACAAGGTGAATGGCGTTTTCGCCTGCGAGAATGCGTTTCTGCTGGAGCAGG TACTGAAGAGTGAGTGGGGATATGATGGTGTCGTCGTCTCGGATTGGGGCGCAACCAAGACGACGGCGGAAGCTGCCAAC AACGGCCTCGATCTCGAGATGCCGGGGCCCCCGCGCCACTTCGGCGCCAAACTTTTTGATGCGGTACAAAACGGTGAAGT CAGCCAGGATGTGATCGACGATCATGCGCGGCGCCTGCTGCGCCTTATTATCCGCTGCGGCTTGCTCGATGGAAATCCCA AATCGGCCAGGGCAGAGCTTTCAAGCACGCGCCACCGCGCCTGCGCGCGCGATGCCGCGCGCCAGTCGATGGTGCTTCTG AAGAACGAAGGCGGCCTTCTGCCGGTTTCGCCGGAAGCAAAGCGCGTCGCTGTCATAGGCCAGCCTGCCTATATGCCGGC CATTCAGGGCGGGGGCAGCTCGCAGGTCAGCCCTGACCGGATCGTCAGTCCACTGGAGGGACTGAAAGCTGCGCTCGGCG GCAAGGTTGATCTCGTCTTTGAACGCGGCCTCGACCATGAGCCCGCGCCGCCCCAGATCGACTGGCGGCTGCTTTCACCC GATGAAGGTTTCACACAGCATGGTCTCACGGCGCGCTATTATGCCAAGCCAGGCTATGCTGGCCCGGTCGCGCATGAAGA GGTCGACTGGCATTTCTCCAAGCTCGGCTTTGGCGGAAAGGTACAGACCGATGAAGATCTATCGTTCTCGGTCGAATGGA CGGGGTATTTCCGTCCGGAGCAGGACGGGGACTATGATTTTGTCATCTCTCATTCCAATGACGATGTAGAGTTCTCCATC GGCAATGAAATTCTCGTCGGCGAGGGAACGCCTTCGGAGCGCGAACTCCTGTTCATGATCCTTCCGCTGAACCGCCGCGA GGCCCGCATGCAAATGCAGGCAGGGCGCACGTACCCGATCCGTATACGGTATTCACAGTCTACCGAGCGGGCCATTCGCG CATTCAACATCTTCAATGTTTCCATGCGGGCACCCGCGCCAAGCCGCGAAGCGGCAATCAAGGCGGCCAAAGAAGCAGAC ATGGTCCTTCTCTTTGTCGGCTCCGGCACCACAGATGAAACCGAAGGCCGCGACCGGCGCAGCATGAAATTGTCAGCGGG GCAGGATGATTTTGTGCGCGAGATTGTCGCCGCCAATCCGAAAACCGCCGTCATCGTCAACACCGGCGCGCCTGTTGAAA TGCCATGGGCCGATGAAGTTCCGGCGATTCTGCAAATGTGGCTGCCGGGCGGGGAAGGCGGCTCGGCCTTGGAAGACCTT CTTTCAGGCAAGGTCTCGCCGTCCGGCAAACTGCCGGTAACGTTCCCCCACCGCTATGAAGACAATCCGACCTATCCCTT TTACCCCGGCCATAAATCGGCCGAGTATGGCGAAGGCGTCTTTGTCGGTTACCGCTATTATGACAAGGCTGGGCGCGATG TCCTGTTTCCGTTCGGGCACGGACTGACCTATTCCCGGTTCGAAATCGGCAGCCTTCAGATGGCGCCTTTATCGGATCAC GGCGTCGACGTATCCGTTTCGCTCACAAACACGGGTGCCGTCGACGCGGCCGAAACCGTCCAACTCTATCTGGAAGACCG CGCCACCAAAGAGGCCATGCCCCCGCGCCAGCTGCGCGCGTTCCGCAAGGTATCCTTGAAGCCCGGTGAAACTCACCAAC TTGCCTTCACGCTCACCCGAGAAGACTTCGCCTGGTTCGACATGCACGCCGGGACATGGGCCGTGTCACCGGGAAAATAC ACCCTGCATGCCGGCTTCTCCTCGCGCGATCTGCGCCAGTCTGCGGAATTTGTGCTCCAGTCATGA
Upstream 100 bases:
>100_bases CCCCCTTATCCGGTAAAAGTTTCTGCCGGGCTATTGCGAAAAAACTTTCCATGTGGAAAGCAACGTTGTCATAGTCAAAA AAACGGCATGGGAGGTAAAA
Downstream 100 bases:
>100_bases CGCAGCCGCTTACAACCGCGACGAAGAAACAGGCACAGGTGCCACTCAAGGCTCGCATCGGTTTCGGTGTAGGTGATTTC GGTTTCCTCCTCGTCTGGCA
Product: glycosy hydrolase family protein
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 821; Mature: 820
Protein sequence:
>821_residues MASQSPETEARISALLAEMTLEEKVSLMAGRDFWTLPAIERLGIPSLRVSDGPTGLRSVNSEAATVFPVGVALAATWNEA LVGEVGAAIAREAIAHDVDVLLAPAVNIQRTPLGGRNFETYSEDPRLAAEIATAYVAGVQSEGVGTSLKHYAANNQEHER MTGSSDMSERTLREIYLAVYEPVIRRANPWTVMGAYNKVNGVFACENAFLLEQVLKSEWGYDGVVVSDWGATKTTAEAAN NGLDLEMPGPPRHFGAKLFDAVQNGEVSQDVIDDHARRLLRLIIRCGLLDGNPKSARAELSSTRHRACARDAARQSMVLL KNEGGLLPVSPEAKRVAVIGQPAYMPAIQGGGSSQVSPDRIVSPLEGLKAALGGKVDLVFERGLDHEPAPPQIDWRLLSP DEGFTQHGLTARYYAKPGYAGPVAHEEVDWHFSKLGFGGKVQTDEDLSFSVEWTGYFRPEQDGDYDFVISHSNDDVEFSI GNEILVGEGTPSERELLFMILPLNRREARMQMQAGRTYPIRIRYSQSTERAIRAFNIFNVSMRAPAPSREAAIKAAKEAD MVLLFVGSGTTDETEGRDRRSMKLSAGQDDFVREIVAANPKTAVIVNTGAPVEMPWADEVPAILQMWLPGGEGGSALEDL LSGKVSPSGKLPVTFPHRYEDNPTYPFYPGHKSAEYGEGVFVGYRYYDKAGRDVLFPFGHGLTYSRFEIGSLQMAPLSDH GVDVSVSLTNTGAVDAAETVQLYLEDRATKEAMPPRQLRAFRKVSLKPGETHQLAFTLTREDFAWFDMHAGTWAVSPGKY TLHAGFSSRDLRQSAEFVLQS
Sequences:
>Translated_821_residues MASQSPETEARISALLAEMTLEEKVSLMAGRDFWTLPAIERLGIPSLRVSDGPTGLRSVNSEAATVFPVGVALAATWNEA LVGEVGAAIAREAIAHDVDVLLAPAVNIQRTPLGGRNFETYSEDPRLAAEIATAYVAGVQSEGVGTSLKHYAANNQEHER MTGSSDMSERTLREIYLAVYEPVIRRANPWTVMGAYNKVNGVFACENAFLLEQVLKSEWGYDGVVVSDWGATKTTAEAAN NGLDLEMPGPPRHFGAKLFDAVQNGEVSQDVIDDHARRLLRLIIRCGLLDGNPKSARAELSSTRHRACARDAARQSMVLL KNEGGLLPVSPEAKRVAVIGQPAYMPAIQGGGSSQVSPDRIVSPLEGLKAALGGKVDLVFERGLDHEPAPPQIDWRLLSP DEGFTQHGLTARYYAKPGYAGPVAHEEVDWHFSKLGFGGKVQTDEDLSFSVEWTGYFRPEQDGDYDFVISHSNDDVEFSI GNEILVGEGTPSERELLFMILPLNRREARMQMQAGRTYPIRIRYSQSTERAIRAFNIFNVSMRAPAPSREAAIKAAKEAD MVLLFVGSGTTDETEGRDRRSMKLSAGQDDFVREIVAANPKTAVIVNTGAPVEMPWADEVPAILQMWLPGGEGGSALEDL LSGKVSPSGKLPVTFPHRYEDNPTYPFYPGHKSAEYGEGVFVGYRYYDKAGRDVLFPFGHGLTYSRFEIGSLQMAPLSDH GVDVSVSLTNTGAVDAAETVQLYLEDRATKEAMPPRQLRAFRKVSLKPGETHQLAFTLTREDFAWFDMHAGTWAVSPGKY TLHAGFSSRDLRQSAEFVLQS >Mature_820_residues ASQSPETEARISALLAEMTLEEKVSLMAGRDFWTLPAIERLGIPSLRVSDGPTGLRSVNSEAATVFPVGVALAATWNEAL VGEVGAAIAREAIAHDVDVLLAPAVNIQRTPLGGRNFETYSEDPRLAAEIATAYVAGVQSEGVGTSLKHYAANNQEHERM TGSSDMSERTLREIYLAVYEPVIRRANPWTVMGAYNKVNGVFACENAFLLEQVLKSEWGYDGVVVSDWGATKTTAEAANN GLDLEMPGPPRHFGAKLFDAVQNGEVSQDVIDDHARRLLRLIIRCGLLDGNPKSARAELSSTRHRACARDAARQSMVLLK NEGGLLPVSPEAKRVAVIGQPAYMPAIQGGGSSQVSPDRIVSPLEGLKAALGGKVDLVFERGLDHEPAPPQIDWRLLSPD EGFTQHGLTARYYAKPGYAGPVAHEEVDWHFSKLGFGGKVQTDEDLSFSVEWTGYFRPEQDGDYDFVISHSNDDVEFSIG NEILVGEGTPSERELLFMILPLNRREARMQMQAGRTYPIRIRYSQSTERAIRAFNIFNVSMRAPAPSREAAIKAAKEADM VLLFVGSGTTDETEGRDRRSMKLSAGQDDFVREIVAANPKTAVIVNTGAPVEMPWADEVPAILQMWLPGGEGGSALEDLL SGKVSPSGKLPVTFPHRYEDNPTYPFYPGHKSAEYGEGVFVGYRYYDKAGRDVLFPFGHGLTYSRFEIGSLQMAPLSDHG VDVSVSLTNTGAVDAAETVQLYLEDRATKEAMPPRQLRAFRKVSLKPGETHQLAFTLTREDFAWFDMHAGTWAVSPGKYT LHAGFSSRDLRQSAEFVLQS
Specific function: Involved in modifying a vir-inducing plant signal molecule. Hydrolyzes coniferin but not cellobiose [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=292, Percent_Identity=31.5068493150685, Blast_Score=145, Evalue=1e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 - InterPro: IPR011658 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 89769; Mature: 89638
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS00775 GLYCOSYL_HYDROL_F3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASQSPETEARISALLAEMTLEEKVSLMAGRDFWTLPAIERLGIPSLRVSDGPTGLRSVN CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHCCCCCEEECCCCCCHHHCC SEAATVFPVGVALAATWNEALVGEVGAAIAREAIAHDVDVLLAPAVNIQRTPLGGRNFET CCCEEEEEEHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCC YSEDPRLAAEIATAYVAGVQSEGVGTSLKHYAANNQEHERMTGSSDMSERTLREIYLAVY CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHH EPVIRRANPWTVMGAYNKVNGVFACENAFLLEQVLKSEWGYDGVVVSDWGATKTTAEAAN HHHHHCCCCEEEEECCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHC NGLDLEMPGPPRHFGAKLFDAVQNGEVSQDVIDDHARRLLRLIIRCGLLDGNPKSARAEL CCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH SSTRHRACARDAARQSMVLLKNEGGLLPVSPEAKRVAVIGQPAYMPAIQGGGSSQVSPDR HHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCCEEEEECCCCCCCEECCCCCCCCCHHH IVSPLEGLKAALGGKVDLVFERGLDHEPAPPQIDWRLLSPDEGFTQHGLTARYYAKPGYA HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCHHCCCEEEEEECCCCC GPVAHEEVDWHFSKLGFGGKVQTDEDLSFSVEWTGYFRPEQDGDYDFVISHSNDDVEFSI CCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEE GNEILVGEGTPSERELLFMILPLNRREARMQMQAGRTYPIRIRYSQSTERAIRAFNIFNV CCEEEEECCCCCCCEEEEEEECCCCHHHHHHHHCCCEEEEEEEECCCHHHHHHEEEEEEE SMRAPAPSREAAIKAAKEADMVLLFVGSGTTDETEGRDRRSMKLSAGQDDFVREIVAANP EECCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCC KTAVIVNTGAPVEMPWADEVPAILQMWLPGGEGGSALEDLLSGKVSPSGKLPVTFPHRYE CEEEEEECCCCEECCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEECCCCCC DNPTYPFYPGHKSAEYGEGVFVGYRYYDKAGRDVLFPFGHGLTYSRFEIGSLQMAPLSDH CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCEECEEEECCEEECCCCCC GVDVSVSLTNTGAVDAAETVQLYLEDRATKEAMPPRQLRAFRKVSLKPGETHQLAFTLTR CEEEEEEECCCCCCCHHHHHHEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEC EDFAWFDMHAGTWAVSPGKYTLHAGFSSRDLRQSAEFVLQS CCCEEEEECCCEEEECCCCEEEECCCCHHHHHHHHHHHHCC >Mature Secondary Structure ASQSPETEARISALLAEMTLEEKVSLMAGRDFWTLPAIERLGIPSLRVSDGPTGLRSVN CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHCCCCCEEECCCCCCHHHCC SEAATVFPVGVALAATWNEALVGEVGAAIAREAIAHDVDVLLAPAVNIQRTPLGGRNFET CCCEEEEEEHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCC YSEDPRLAAEIATAYVAGVQSEGVGTSLKHYAANNQEHERMTGSSDMSERTLREIYLAVY CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHH EPVIRRANPWTVMGAYNKVNGVFACENAFLLEQVLKSEWGYDGVVVSDWGATKTTAEAAN HHHHHCCCCEEEEECCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHC NGLDLEMPGPPRHFGAKLFDAVQNGEVSQDVIDDHARRLLRLIIRCGLLDGNPKSARAEL CCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH SSTRHRACARDAARQSMVLLKNEGGLLPVSPEAKRVAVIGQPAYMPAIQGGGSSQVSPDR HHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCCEEEEECCCCCCCEECCCCCCCCCHHH IVSPLEGLKAALGGKVDLVFERGLDHEPAPPQIDWRLLSPDEGFTQHGLTARYYAKPGYA HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCHHCCCEEEEEECCCCC GPVAHEEVDWHFSKLGFGGKVQTDEDLSFSVEWTGYFRPEQDGDYDFVISHSNDDVEFSI CCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEECCCCCEEEEE GNEILVGEGTPSERELLFMILPLNRREARMQMQAGRTYPIRIRYSQSTERAIRAFNIFNV CCEEEEECCCCCCCEEEEEEECCCCHHHHHHHHCCCEEEEEEEECCCHHHHHHEEEEEEE SMRAPAPSREAAIKAAKEADMVLLFVGSGTTDETEGRDRRSMKLSAGQDDFVREIVAANP EECCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCC KTAVIVNTGAPVEMPWADEVPAILQMWLPGGEGGSALEDLLSGKVSPSGKLPVTFPHRYE CEEEEEECCCCEECCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCEEECCCCCC DNPTYPFYPGHKSAEYGEGVFVGYRYYDKAGRDVLFPFGHGLTYSRFEIGSLQMAPLSDH CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCEECEEEECCEEECCCCCC GVDVSVSLTNTGAVDAAETVQLYLEDRATKEAMPPRQLRAFRKVSLKPGETHQLAFTLTR CEEEEEEECCCCCCCHHHHHHEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEEEC EDFAWFDMHAGTWAVSPGKYTLHAGFSSRDLRQSAEFVLQS CCCEEEEECCCEEEECCCCEEEECCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537792 [H]