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The map label for this gene is ynaJ [H]

Identifier: 114799927

GI number: 114799927

Start: 2557871

End: 2559349

Strand: Reverse

Name: ynaJ [H]

Synonym: HNE_2445

Alternate gene names: 114799927

Gene position: 2559349-2557871 (Counterclockwise)

Preceding gene: 114799008

Following gene: 114798363

Centisome position: 69.08

GC content: 60.78

Gene sequence:

>1479_bases
ATGGGCCGTGTCACCGGGAAAATACACCCTGCATGCCGGCTTCTCCTCGCGCGATCTGCGCCAGTCTGCGGAATTTGTGC
TCCAGTCATGACGCAGCCGCTTACAACCGCGACGAAGAAACAGGCACAGGTGCCACTCAAGGCTCGCATCGGTTTCGGTG
TAGGTGATTTCGGTTTCCTCCTCGTCTGGCAGGGCACCGCGCTGTTCCTGATGTATTTCTATACGGACGTTCTGGGCATT
TCGCCGGTCATGGCCGGAACCATCTATATGGTCGCGATGATCTGGGACGCGGTAACAGACCCGGTCTTCGCCGCGATGGC
AGACCGCACGCGTTCTTCCATGGGAATGTACCGGCCCTGGCTGCTCTATGGCGCCGTGCCATTTGGCATCGCGTATCCAT
TAGCTTTCTCGGGGCCGGGCAGCCTGCCCATCGACCCGGTCATCTGGGCATTGGCCACCCACATCTTCCTGCGCACCGCC
TATACGGTCGTTTCCATGCCGTTCAATTCGCTTCAGGCGCGGCTCACCAGTGATGGGGAGGAGCGCTCCGTGCTTGCCGG
CTTCCGGATGGTCGGCGCCGCCAGCGGCGGTCTCGCCGTCGTGTTCCTCACGCCGATCCTCGTCCAGACGTTCGGGGAAG
GCCGCGAAGCGCAGGCTTATTTCATATCCGCCTGCATCAGCGGCGCGCTGGCCACACTGGCCTTGCTCTACTGCTTCTAT
TCCATGCGCGAGCCAGATGCTCAGCCCGCAGCCTCAGACAGCTTCTTGGGAGACTTGAAATCCATCTTCCCGATGTTCCT
GGCAAACCCGCCGCTCATCCGCGTCTTCGCTATCATCGTGCTGGGCTCGGTGTGTCTCGGCATGTTCGGCAAGAACATGC
TCTATCATTTCAAGTATGATCTCCAGCGGCCCGAGCTTACCGTCATTGCCCTGGTCCTGCCTGCCATCCTCCTGGTGCTG
ACCGTCCCGTTCTGGGTCTGGGTATCAAAACGCAGCTCCAAACGCTTTGCGCTGGCAATGGGCACGCTGGTTTCCCTCAC
GGGTTATCTGCTCTTTTTCTTCAATTTCGAGAACTGGCTCTGGCTCACTTTTGGATCGATCCTGATCACCGGCATCGGGT
CGTCGTCCCTCGCCGTTATGTTCTGGGCGATGCTGCCCGATACGGTTGAGTATGGTGAAGTCAAAACCGGTGTGCGCGCC
GAGGCCAAGACCTTCGGCTTTGCCACCTTCGCGCAGAAGGCCGCCACCGGAATCAATGCCGTCCTGCTGGGCGCGCTCCT
CGGCGTTGTGGGTTTTGAGGCAAACGCCACGCTGACTGGTGAGACCCTGCTCGGCATGAAAGCCATCATGGCCCTCATCC
CGGCGGTGGGCGCCGTGGCCATTCTCCTCGTCCTGCGCGGATATGACCTTGATCACGCCCAACACCGCGACCTGGTGCGC
CAGCTCGAGGCGCGCCGGGCTGAGGAGGTTGAAGGCTAG

Upstream 100 bases:

>100_bases
GCGCGTTCCGCAAGGTATCCTTGAAGCCCGGTGAAACTCACCAACTTGCCTTCACGCTCACCCGAGAAGACTTCGCCTGG
TTCGACATGCACGCCGGGAC

Downstream 100 bases:

>100_bases
GCCGACAGCGCTTCCGGGTTCAGCCGGTCGCGCAGGTCGCGTTTCAGGAACTTGCCGCTGGCATTGCGGGGCAGGGGCTC
ATCGAGGAACCAGATGTAGC

Product: sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MGRVTGKIHPACRLLLARSAPVCGICAPVMTQPLTTATKKQAQVPLKARIGFGVGDFGFLLVWQGTALFLMYFYTDVLGI
SPVMAGTIYMVAMIWDAVTDPVFAAMADRTRSSMGMYRPWLLYGAVPFGIAYPLAFSGPGSLPIDPVIWALATHIFLRTA
YTVVSMPFNSLQARLTSDGEERSVLAGFRMVGAASGGLAVVFLTPILVQTFGEGREAQAYFISACISGALATLALLYCFY
SMREPDAQPAASDSFLGDLKSIFPMFLANPPLIRVFAIIVLGSVCLGMFGKNMLYHFKYDLQRPELTVIALVLPAILLVL
TVPFWVWVSKRSSKRFALAMGTLVSLTGYLLFFFNFENWLWLTFGSILITGIGSSSLAVMFWAMLPDTVEYGEVKTGVRA
EAKTFGFATFAQKAATGINAVLLGALLGVVGFEANATLTGETLLGMKAIMALIPAVGAVAILLVLRGYDLDHAQHRDLVR
QLEARRAEEVEG

Sequences:

>Translated_492_residues
MGRVTGKIHPACRLLLARSAPVCGICAPVMTQPLTTATKKQAQVPLKARIGFGVGDFGFLLVWQGTALFLMYFYTDVLGI
SPVMAGTIYMVAMIWDAVTDPVFAAMADRTRSSMGMYRPWLLYGAVPFGIAYPLAFSGPGSLPIDPVIWALATHIFLRTA
YTVVSMPFNSLQARLTSDGEERSVLAGFRMVGAASGGLAVVFLTPILVQTFGEGREAQAYFISACISGALATLALLYCFY
SMREPDAQPAASDSFLGDLKSIFPMFLANPPLIRVFAIIVLGSVCLGMFGKNMLYHFKYDLQRPELTVIALVLPAILLVL
TVPFWVWVSKRSSKRFALAMGTLVSLTGYLLFFFNFENWLWLTFGSILITGIGSSSLAVMFWAMLPDTVEYGEVKTGVRA
EAKTFGFATFAQKAATGINAVLLGALLGVVGFEANATLTGETLLGMKAIMALIPAVGAVAILLVLRGYDLDHAQHRDLVR
QLEARRAEEVEG
>Mature_491_residues
GRVTGKIHPACRLLLARSAPVCGICAPVMTQPLTTATKKQAQVPLKARIGFGVGDFGFLLVWQGTALFLMYFYTDVLGIS
PVMAGTIYMVAMIWDAVTDPVFAAMADRTRSSMGMYRPWLLYGAVPFGIAYPLAFSGPGSLPIDPVIWALATHIFLRTAY
TVVSMPFNSLQARLTSDGEERSVLAGFRMVGAASGGLAVVFLTPILVQTFGEGREAQAYFISACISGALATLALLYCFYS
MREPDAQPAASDSFLGDLKSIFPMFLANPPLIRVFAIIVLGSVCLGMFGKNMLYHFKYDLQRPELTVIALVLPAILLVLT
VPFWVWVSKRSSKRFALAMGTLVSLTGYLLFFFNFENWLWLTFGSILITGIGSSSLAVMFWAMLPDTVEYGEVKTGVRAE
AKTFGFATFAQKAATGINAVLLGALLGVVGFEANATLTGETLLGMKAIMALIPAVGAVAILLVLRGYDLDHAQHRDLVRQ
LEARRAEEVEG

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Homo sapiens, GI42713696, Length=486, Percent_Identity=23.0452674897119, Blast_Score=93, Evalue=7e-19,
Organism=Homo sapiens, GI211063479, Length=449, Percent_Identity=23.6080178173719, Blast_Score=86, Evalue=7e-17,
Organism=Escherichia coli, GI1786466, Length=459, Percent_Identity=31.3725490196078, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI87082306, Length=458, Percent_Identity=28.6026200873362, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1790561, Length=452, Percent_Identity=26.1061946902655, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1787902, Length=467, Percent_Identity=27.8372591006424, Blast_Score=142, Evalue=6e-35,
Organism=Escherichia coli, GI145693206, Length=466, Percent_Identity=25.7510729613734, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI48994989, Length=465, Percent_Identity=26.0215053763441, Blast_Score=130, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 53264; Mature: 53132

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRVTGKIHPACRLLLARSAPVCGICAPVMTQPLTTATKKQAQVPLKARIGFGVGDFGFL
CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHEECCCCCCHHHE
LVWQGTALFLMYFYTDVLGISPVMAGTIYMVAMIWDAVTDPVFAAMADRTRSSMGMYRPW
EEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LLYGAVPFGIAYPLAFSGPGSLPIDPVIWALATHIFLRTAYTVVSMPFNSLQARLTSDGE
HHHCCCHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
ERSVLAGFRMVGAASGGLAVVFLTPILVQTFGEGREAQAYFISACISGALATLALLYCFY
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SMREPDAQPAASDSFLGDLKSIFPMFLANPPLIRVFAIIVLGSVCLGMFGKNMLYHFKYD
HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEC
LQRPELTVIALVLPAILLVLTVPFWVWVSKRSSKRFALAMGTLVSLTGYLLFFFNFENWL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
WLTFGSILITGIGSSSLAVMFWAMLPDTVEYGEVKTGVRAEAKTFGFATFAQKAATGINA
HHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHH
VLLGALLGVVGFEANATLTGETLLGMKAIMALIPAVGAVAILLVLRGYDLDHAQHRDLVR
HHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
QLEARRAEEVEG
HHHHHHHHCCCC
>Mature Secondary Structure 
GRVTGKIHPACRLLLARSAPVCGICAPVMTQPLTTATKKQAQVPLKARIGFGVGDFGFL
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHEECCCCCCHHHE
LVWQGTALFLMYFYTDVLGISPVMAGTIYMVAMIWDAVTDPVFAAMADRTRSSMGMYRPW
EEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LLYGAVPFGIAYPLAFSGPGSLPIDPVIWALATHIFLRTAYTVVSMPFNSLQARLTSDGE
HHHCCCHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
ERSVLAGFRMVGAASGGLAVVFLTPILVQTFGEGREAQAYFISACISGALATLALLYCFY
HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
SMREPDAQPAASDSFLGDLKSIFPMFLANPPLIRVFAIIVLGSVCLGMFGKNMLYHFKYD
HHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEC
LQRPELTVIALVLPAILLVLTVPFWVWVSKRSSKRFALAMGTLVSLTGYLLFFFNFENWL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
WLTFGSILITGIGSSSLAVMFWAMLPDTVEYGEVKTGVRAEAKTFGFATFAQKAATGINA
HHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHH
VLLGALLGVVGFEANATLTGETLLGMKAIMALIPAVGAVAILLVLRGYDLDHAQHRDLVR
HHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
QLEARRAEEVEG
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]