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The map label for this gene is 114798829

Identifier: 114798829

GI number: 114798829

Start: 3542551

End: 3543291

Strand: Reverse

Name: 114798829

Synonym: HNE_3397

Alternate gene names: NA

Gene position: 3543291-3542551 (Counterclockwise)

Preceding gene: 114798739

Following gene: 114800135

Centisome position: 95.63

GC content: 63.02

Gene sequence:

>741_bases
ATGAAGATCGCGTCTTCAAAGCCTGTTCTCGAATCTCGGGTGAACTCATCCATGCCAGCCTTATGCGGCAGCCTGTCTCT
TGCGCCAAGCGGCGGAATTGGGGCCTATCAGGGCATGCGTATGTCATCCGCCTTTGCCGTTCCGGCGCTTTTCCTGCTTG
CCGCCTGCGGCCCCACCGAAGCGCCTGCATCTGGCGGCTCGGCAATTGCCAGTTCCGGCGGTCTCACCTCCGGCTGCGCC
AGCCGCGCCTACACCGAAATCGGCGGACCGATCTCGCTGATCGACGACACCGGCGCGCGCGTCACCGAGGAGACCTATAA
GGGCCAGCCCACGGTTATCTATTTCGGCTTCACCTATTGCCCGGATGTTTGCCCGGCGGCGCTCTCGACGCTCGGCGCGG
CCTACCGCCGCCTGCCCGAAGGCGAAACCGCGCCGCAAACCCTGCTGATATCGGTCGATCCCGAACGCGATACGCCCGAG
GCGCTGGCCACCTATGTGACGACCCCGGCCTTTCCGGCGGGTCTGACTGGTCTGACCGGTAGTCCCGAAGAAATCCGCGC
CACCGCCGATGCCTTCAAGGCCGATTATGCCCGCATCGAGCAACCCGAAAGCCTCGCCGAATACACGATGGACCACACCA
ACCTCATCTATGTGATGGATGAGGACTGGCAGCTGAAGACGTTCTTCACCCATGAGGACACGCCCGAGACGATCTCGGCT
TGCCTCGCGGAGCTGTTCTAG

Upstream 100 bases:

>100_bases
TGTCTGCCCGGCTACAGCAAGCCAGCGCAGCGTAATGAACGTGCGCAGCCGGGTGCGCCCGAGGGCGGACTGGGCCGAGC
CCAGCCCCTCAGGGGCCAGC

Downstream 100 bases:

>100_bases
GGCTGGCTAAATCTCGTCCGCCCCGCCCGGATTGCGGCGGCGGCGGATCAGCCACATCACGCCGCGCAGGTCTGACAGGG
CGTCCTTGAGGCGGCCGAAA

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKIASSKPVLESRVNSSMPALCGSLSLAPSGGIGAYQGMRMSSAFAVPALFLLAACGPTEAPASGGSAIASSGGLTSGCA
SRAYTEIGGPISLIDDTGARVTEETYKGQPTVIYFGFTYCPDVCPAALSTLGAAYRRLPEGETAPQTLLISVDPERDTPE
ALATYVTTPAFPAGLTGLTGSPEEIRATADAFKADYARIEQPESLAEYTMDHTNLIYVMDEDWQLKTFFTHEDTPETISA
CLAELF

Sequences:

>Translated_246_residues
MKIASSKPVLESRVNSSMPALCGSLSLAPSGGIGAYQGMRMSSAFAVPALFLLAACGPTEAPASGGSAIASSGGLTSGCA
SRAYTEIGGPISLIDDTGARVTEETYKGQPTVIYFGFTYCPDVCPAALSTLGAAYRRLPEGETAPQTLLISVDPERDTPE
ALATYVTTPAFPAGLTGLTGSPEEIRATADAFKADYARIEQPESLAEYTMDHTNLIYVMDEDWQLKTFFTHEDTPETISA
CLAELF
>Mature_246_residues
MKIASSKPVLESRVNSSMPALCGSLSLAPSGGIGAYQGMRMSSAFAVPALFLLAACGPTEAPASGGSAIASSGGLTSGCA
SRAYTEIGGPISLIDDTGARVTEETYKGQPTVIYFGFTYCPDVCPAALSTLGAAYRRLPEGETAPQTLLISVDPERDTPE
ALATYVTTPAFPAGLTGLTGSPEEIRATADAFKADYARIEQPESLAEYTMDHTNLIYVMDEDWQLKTFFTHEDTPETISA
CLAELF

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=159, Percent_Identity=39.622641509434, Blast_Score=110, Evalue=8e-25,
Organism=Homo sapiens, GI281182727, Length=153, Percent_Identity=33.9869281045752, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI281182722, Length=153, Percent_Identity=33.9869281045752, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI281182716, Length=153, Percent_Identity=33.9869281045752, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI153791313, Length=153, Percent_Identity=33.9869281045752, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17531419, Length=161, Percent_Identity=27.9503105590062, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6319498, Length=149, Percent_Identity=34.2281879194631, Blast_Score=100, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6319511, Length=149, Percent_Identity=32.8859060402685, Blast_Score=90, Evalue=4e-19,
Organism=Drosophila melanogaster, GI19920710, Length=165, Percent_Identity=35.1515151515151, Blast_Score=107, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 25817; Mature: 25817

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIASSKPVLESRVNSSMPALCGSLSLAPSGGIGAYQGMRMSSAFAVPALFLLAACGPTE
CCCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCC
APASGGSAIASSGGLTSGCASRAYTEIGGPISLIDDTGARVTEETYKGQPTVIYFGFTYC
CCCCCCCHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEHHHHCCCCEEEEEECHHC
PDVCPAALSTLGAAYRRLPEGETAPQTLLISVDPERDTPEALATYVTTPAFPAGLTGLTG
CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCC
SPEEIRATADAFKADYARIEQPESLAEYTMDHTNLIYVMDEDWQLKTFFTHEDTPETISA
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCHHHHHH
CLAELF
HHHHHC
>Mature Secondary Structure
MKIASSKPVLESRVNSSMPALCGSLSLAPSGGIGAYQGMRMSSAFAVPALFLLAACGPTE
CCCCCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCC
APASGGSAIASSGGLTSGCASRAYTEIGGPISLIDDTGARVTEETYKGQPTVIYFGFTYC
CCCCCCCHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEHHHHCCCCEEEEEECHHC
PDVCPAALSTLGAAYRRLPEGETAPQTLLISVDPERDTPEALATYVTTPAFPAGLTGLTG
CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCC
SPEEIRATADAFKADYARIEQPESLAEYTMDHTNLIYVMDEDWQLKTFFTHEDTPETISA
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCHHHHHH
CLAELF
HHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]